Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4952 ATGTTAAATATATTACTCTTAATATTAATTTTATTTTATTTCTCTTGTGCTAATTACTATTACTATTCTAAATATATCTATACACTATACACAATGTCTTTGAAGATAGGAGCTGAAAATTGGCCAAAATCATCGTCACAAAAGGATGAAGAACCATTGATAGTTATAAGAGAGTATGATGAAGAGAAACACAAAGTGGAAGTAGAGAAATTGGAGAGACTTTGTGAAGTTGGACAAAGAGGAAAACCTTCTCTTGTTACTGACTTATTGGGTGATCCTATTTGCAGAATTCGTCACTTTCAATTACATGTCATGCTGGTTGCAGAATATGGAAAAGAAGGAGAAATTGTTGGAGTGATAAGAGGTTGTGTGAAAACAGTTGCAAGAGGGAATTCAGCTTATGTAAAACTTGCTTATGTTTTAGGACTTAGAGTCTCTCCCAAGCACAGGAGATTTGGCATTGGCACAAAATTAGTTGAACATTTAGAAGAGTGGTGCAAGCAAAAAGGAGCAAAGTATGCATATATGGCAACTGATTGTACAAATGAGCCATCCATCAATTTGTTCACAAAAAAATGTGGTTACTCAAAATTCAGGACACTGACCATGCTAGTGCAACCTGTCCATGCTCATTACAAGCCAATCAGCACAAGTATTGCCGTTCTTCGCCTACCACCGCGCCTAGCCGGGCTCACGTACAACCATATGTTCACCAATTCAGAATTTTTCCCAAAAGACATGGACTTGATTTTGTCAAATAAACTTAATTTGGGCACATTCATGGCCATCCCAAAAAAATACCTAACAAAATGTGATCCAAAAAATGGTATTTTCCCTCCAAGCTATGCAATATTAAGTGTGTGGAACACAAAAGAAGTGTTCAAATTACAAGTTAAAGGAATGTCACCTTTTGTGCATGCATGTTGTGTAGGTACAAGATTATTAGATGGATGTATGCCATGGCTAAAGTTACCTTCATTTCCTAATGTTTTTAGGCCATTTGGAATTTATCTAATGTATGGATTACAAATGGAGGGTAAATTTGGAAAACAACTTATGAAGTCATTATGTGGATTTGTGCATAATATGGCTAGAGATGATGGTGGTTGTGGGGCTATTGTGGCTGAAGTTAGTCAAAGGGATCCAGTTAGAGAAGCAATTCCACATTGGAGCAAATTATCTTGGGCTGAGGACATGTGGTGCATTAAAAATCTTGAAGATATGAAGAAGGAAATTTTCCATGAAAAATGTGGACTCTCTAATTGGCTGAATTATAGATCATCTTCATCAGTAATTTTTGTTGATCCTCGTGATTTTTGA 1320 0.3606 MLNILLLILILFYFSCANYYYYSKYIYTLYTMSLKIGAENWPKSSSQKDEEPLIVIREYDEEKHKVEVEKLERLCEVGQRGKPSLVTDLLGDPICRIRHFQLHVMLVAEYGKEGEIVGVIRGCVKTVARGNSAYVKLAYVLGLRVSPKHRRFGIGTKLVEHLEEWCKQKGAKYAYMATDCTNEPSINLFTKKCGYSKFRTLTMLVQPVHAHYKPISTSIAVLRLPPRLAGLTYNHMFTNSEFFPKDMDLILSNKLNLGTFMAIPKKYLTKCDPKNGIFPPSYAILSVWNTKEVFKLQVKGMSPFVHACCVGTRLLDGCMPWLKLPSFPNVFRPFGIYLMYGLQMEGKFGKQLMKSLCGFVHNMARDDGGCGAIVAEVSQRDPVREAIPHWSKLSWAEDMWCIKNLEDMKKEIFHEKCGLSNWLNYRSSSSVIFVDPRDF* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4952 439 PANTHER OS12G0561600 PROTEIN 32 439 - -
Tpr4g4952 439 Pfam Acetyltransferase (GNAT) family 105 195 IPR000182 GO:0016407
Tpr4g4952 439 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 54 201 IPR016181 -
Tpr4g4952 439 Gene3D - 51 200 - -
Tpr4g4952 439 PANTHER N-ACETYLTRANSFERASE 32 439 - -
Tpr4g4952 439 CDD NAT_SF 105 175 - -
Tpr4g4952 439 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 54 225 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4952 Tpr-Chr4 60258802 60262018 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Tpr4g4952 Acetyltransf_1 4.6e-19 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4952 - - mtr:MTR_4g007130 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4952 4 60258802 60262018 Tpr4g4952 4 60258802 60262018 ECH