Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4946 ATGGATTGTTCATCATATATCAACACTTCCTTGGATCTTAACATTATTCCTTATAGAAATCATGAAGAAGTTCAAAAGAAGGAGGTGGAAAGCAACTTTTTCTCCTTGGGGATGACCAAGTTTTCTGTGAAAGATGAGTCCATTGATGAATTGGAGGAGGAACTGAAAAGGGTGACTGCAGAAAACAAGAAATTGGTGGAAATGCTTTCAGTGGTTTGTGAGAATTACAACACTTTGAGAAGTCATTTGATGGAATATATGAAGAGAAATCCTGAGAAGGAACTTAGTGCATCATCAAAGAAAAGAAAATCTGAAAGCAGCAACAATAACAATAGTAACTTGATCGGAATTAACAACGGAAACTCCGAGAGTAGCTCAACCGACGAAGAATTGTGTAAGAAACCAAGGGAGGAAGAAAATCTTAAAGCCAAAATTTCACGAGCTTATGTTAGGACTGAAGCATCTGATACAGGCCTCATTGTGAAGGATGGATATCATTGGAGGAAATATGGACAAAAAGTGACAAGAGATAATCCTTGTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCAAGTTGTCCAGTCAAAAAGAAGGTGCAAAGAAGTGTCGACGATCAATCTATGCTTGTTGCTACTTATGAAGGAGAGCACAATCATCCTCAACCTCCTCAAATGGAGTCAACATCTGGCTCTGCCCGTAGCGTTAGCCTCAATTCGGTACCAACTTCAGCGTCACTCAGCTCATCAGCGCCAAAAGTTGTTACACTTGACTTAACAAATTCTAAGAGTAGTACTAAAGATTCAAAGATTATTGAACCAAAAAAAGAGTCACCCAAGGTAACAAAGAATTTGGTGGAACAAATGGCTACTTCTTTGACAACTGATCCTAATTTTAGAGCAGCACTTGTTGCAGCCATATCAGGAAGATTAGTGCATAATAATTAA 945 0.3841 MDCSSYINTSLDLNIIPYRNHEEVQKKEVESNFFSLGMTKFSVKDESIDELEEELKRVTAENKKLVEMLSVVCENYNTLRSHLMEYMKRNPEKELSASSKKRKSESSNNNNSNLIGINNGNSESSSTDEELCKKPREEENLKAKISRAYVRTEASDTGLIVKDGYHWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSMLVATYEGEHNHPQPPQMESTSGSARSVSLNSVPTSASLSSSAPKVVTLDLTNSKSSTKDSKIIEPKKESPKVTKNLVEQMATSLTTDPNFRAALVAAISGRLVHNN* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4946 314 Pfam WRKY DNA -binding domain 162 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g4946 314 SMART WRKY_cls 161 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g4946 314 SUPERFAMILY WRKY DNA-binding domain 159 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g4946 314 PANTHER TRANSCRIPTION FACTOR 1 314 - -
Tpr4g4946 314 MobiDBLite consensus disorder prediction 91 135 - -
Tpr4g4946 314 Gene3D WRKY domain 144 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr4g4946 314 MobiDBLite consensus disorder prediction 221 251 - -
Tpr4g4946 314 ProSiteProfiles WRKY domain profile. 160 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr4g4946 314 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 314 IPR044810 GO:0003700
Tpr4g4946 314 Coils Coil 41 68 - -
Tpr4g4946 314 MobiDBLite consensus disorder prediction 215 251 - -
Tpr4g4946 314 MobiDBLite consensus disorder prediction 102 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4946 Tpr-Chr4 60222318 60224996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4946 4 314 WRKY Transcription Factor Family AT1G80840 51.875 3.20e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr4g4946 WRKY 2.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4946 - - gmx:100807966 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4946 4 60222318 60224996 Tpr4g4946 4 60222318 60224996 ECH