Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4944 ATGGATCAACAAAACAAACAAAGTTTCCAAAACCCCAAACACATAATTTTCGACAAATACGAAATGGGAAAAGTCTTGGGTCAAGGAAACTTTGCAAAGGTTTACCATTGTAGAAGCCTTTCAACAAACGAGAGTGTAGCCACCAAGGTGATAAAGAAAGAGAAGCTAAAAAAAGAGAGGTTAGTGAAGCAAATCAAGCGTGAAGTTTCGGTTATGCGTCTCGTTCGCCATCCTCATATCGTTGACCTCAAAGAAGTTATGGCAACAAAGGGAAAAATATTTCTAGTAATGGAATATGTAAAAGGAGGTGAACTTTTTGCCAAAGTTGCAAAAGGAAAATTGAAAGAAGATGTTGCTAGAAAATACTTTCAACAGCTCATCAGCGCTGTTGATTTTTGTCATAGTCGCGGTGTGACACACCGTGATTTGAAACCAGAGAATCTCCTCTTAGACGAAAAAGAAGACCTAAAGGTCTCCGATTTTGGACTCTCAGCATTGCCAGAGCAACATCGAGAGGATGGGATGCTTTTAACTCCATGTGGGACCCCTGCTTATGTGGCACCCGAGGTTTTGAAGAAGAAAGGGTATGATGGTTCTAAGGCTGATCTATGGTCTTGTGGTGTTATCCTCTATGCCTTGGTTTGTGGATATCTTCCTTTTCAAGGTGAGAATGTTATGAGGATTTATAAAAAGGCTTTTAAAGGTGAATATGAATTTCCTGAATGGATTTCTCCGCAAGCTAAAATATTAATTTCGAATCTTCTTGTCGCGGATCCTAAAAAAAGGTATTCAATTGTTGATATTATGAATGATCCTTGGTTTCGAATTGGGTTTGTTAGACCCATTGCGTTTTCTATGAATGGTTCGAGTATTGAAGATAACGACAAAGACATCAATATTGATTTCAATGAGGTTGGTGAAGATAATGTTGATGTTCCTGAATTGATAATGGCGAAGCCATCTCGTCCTTTTTATAATGCATTTGAGATAATTTCGTCGTTGTCACATGGTTTTGATCTTAGGAATTTGTTTGAGACGAGGAAAAAGTTGCCATCAATGTTTATATCAAAATTTTCGGCTTCAACGGTCTTGGAGAAACTTGAGGTGATGGCGAAGAAGTTGAACTTTAGGATGACAGGGAAGAAGGAGTTCGTTGTGAGATTTGAGGGGACAAAAGATGGGAGAAAGGGGAAGGTGGTGGTGATGATGGAGGTGTTTGGGGTGGCACCGGACGTGGCGGTGGTTGAGTTTTCTAAGTGTGGTGGAGACACATTGGAGTATGTTAAGTTGTGTGATGAACAATTAAGACCTTCACTCAAAGATATTGTTTGGAGTTGGCAAGGTGACAATCATAACGATAACAACTCTCAATAG 1374 0.3952 MDQQNKQSFQNPKHIIFDKYEMGKVLGQGNFAKVYHCRSLSTNESVATKVIKKEKLKKERLVKQIKREVSVMRLVRHPHIVDLKEVMATKGKIFLVMEYVKGGELFAKVAKGKLKEDVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDEKEDLKVSDFGLSALPEQHREDGMLLTPCGTPAYVAPEVLKKKGYDGSKADLWSCGVILYALVCGYLPFQGENVMRIYKKAFKGEYEFPEWISPQAKILISNLLVADPKKRYSIVDIMNDPWFRIGFVRPIAFSMNGSSIEDNDKDINIDFNEVGEDNVDVPELIMAKPSRPFYNAFEIISSLSHGFDLRNLFETRKKLPSMFISKFSASTVLEKLEVMAKKLNFRMTGKKEFVVRFEGTKDGRKGKVVVMMEVFGVAPDVAVVEFSKCGGDTLEYVKLCDEQLRPSLKDIVWSWQGDNHNDNNSQ* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4944 457 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Tpr4g4944 457 SUPERFAMILY Protein kinase-like (PK-like) 16 334 IPR011009 -
Tpr4g4944 457 ProSiteProfiles NAF domain profile. 320 345 IPR018451 GO:0007165
Tpr4g4944 457 CDD CIPK_C 326 440 - -
Tpr4g4944 457 Gene3D Kinase associated domain 1, KA1 328 445 - -
Tpr4g4944 457 Pfam NAF domain 324 378 IPR004041 GO:0007165
Tpr4g4944 457 PANTHER - 11 455 - -
Tpr4g4944 457 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4944 457 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4944 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Tpr4g4944 457 PANTHER CBL-INTERACTING PROTEIN KINASE 16 11 455 - -
Tpr4g4944 457 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4944 457 Gene3D Transferase(Phosphotransferase) domain 1 12 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4944 Tpr-Chr4 60180310 60182796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4944 10 454 CBL-interacting serine-threonine protein kinases AT5G25110 59.101 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Tpr4g4944 Pkinase 1.5e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4944 - - gmx:100812424 711.835