Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4920 ATGAATCACCTAAATCCAAAATCATATCCATCTGAAAATTTGAACTTTCCATACCTAGAAACTTCTATGGATACAAAACACAAAAATGAATCATCTCCTCAACTTGTACTTGATCTAAGTCTCTCTTGCAAAGATTCTTGTGATGATGAATCAAAGCAAGAACTCAACCTTCTTAATTGTTTCCATGCAAATTTATCTGAAAGCTCCTCGGAATCTAGTCTTGATCCAAATGAACTTGATCCAAGAGTTTTCTCATGCAACTATTGTCAGAGAAAATTTTATAGTTCTCAAGCACTCGGAGGACACCAGAATGCACATAAGCGCGAAAGAACTTTAGCACGAAGAGGCTATACAACTAGCATGCCTTCTTCTATGTCTTCTTATGGCTTATGCAACAAATCACTTGGCATTCAAGTGCATTCTATGATTAACAAACCTTCTTACCAAAAACCCTTTTTTGGATTTTGTTCAAATGGCCAAAATGGTTGGAAAAGACAGAATTTTGATTCACAACCAGCAATTAGAAAACTTCCATCTGGAAATTTTCATGTGAGGAATGAAACTGAACCTTCCTTTGGTAGTAGCATTTCAAAGGTAGCAATGTTTCCTAAAGGGTTGGTGAATGAAGGATTTGGAAGTTACTTATTGGATAAAAGCACTTCTCATTTGAAGTCTAAACAAGAGAAGTTGAAGAATCTTGACTTATCTCTTAAGCTCTAA 720 0.3542 MNHLNPKSYPSENLNFPYLETSMDTKHKNESSPQLVLDLSLSCKDSCDDESKQELNLLNCFHANLSESSSESSLDPNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYTTSMPSSMSSYGLCNKSLGIQVHSMINKPSYQKPFFGFCSNGQNGWKRQNFDSQPAIRKLPSGNFHVRNETEPSFGSSISKVAMFPKGLVNEGFGSYLLDKSTSHLKSKQEKLKNLDLSLKL* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4920 239 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 239 IPR044246 GO:0009788
Tpr4g4920 239 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 19 239 - -
Tpr4g4920 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Tpr4g4920 239 SUPERFAMILY beta-beta-alpha zinc fingers 81 111 IPR036236 -
Tpr4g4920 239 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Tpr4g4920 239 Gene3D Classic Zinc Finger 68 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4920 Tpr-Chr4 59958851 59960023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4920 12 239 C2H2 Transcription Factor Family AT5G10970 39.754 4.07e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr4g4920 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4920 - - mtr:MTR_4g006575 346.665