Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4904 ATGAAGCCGATTCAACTTCCACCTCCAACCGCCACCGGCTCAGCCACAGCCACGGGTTCTCCCAACCGTCCTCAGCGCCGCCGTAGAGACCTTACCCTTCCTCTTCCACAGCGTGACACAAACCTAGCTGTACCGCTTCCGCTTCCTCCGTCCGGCAGCGGAAGCGGTGGAAGCGGCAGTGGAGGAAACGGAAACAACGGTGGTGGAGGAGGAAACGGAGGATCAGCGACGACTCAACAACTGGTGATTCCGTTCGCGGAGCTTGAAAGGTTGAACCGGATCGGAAGTGGTAGCGGAGGAACGGTTTACAAAGTAGTTCACAGAATCAACGGTCGCGCTTACGCTTTGAAAGTGATTTACGGACATCACGAGGAATCAGTTCGTCGTCAGATCCATAGAGAAATCCAGATCTTAAGAGATGTAGATGATCCAAACGTTGTCAAGTGTCACGAGATGTACGATCACAACGCTGAAATTCAGGTTCTGTTAGAATACATGGACGGTGGATCTCTTGAAGGGAAACACATCCCTCAGGAGAATCAGTTAGCTGACGTGGCACGTCAGATCCTCCGTGGACTCGCTTATCTCCACCGTCGTCACATCGTTCACCGTGACATCAAACCGTCAAATCTGTTGATAAATTCACGGAAACAGGTTAAGATCGCTGACTTTGGTGTAGGTAGGATTCTGAATCAAACTATGGATCCGTGTAATTCATCGGTAGGAACGATTGCTTACATGTCGCCGGAGAGGATAAACACTGATATCAACGACGGACAATACGATGCTTACGCCGGTGATATATGGAGTTTAGGAGTGAGTATATTGGAGTTTTATATGGGAAGATTTCCGTTTGCGGTTGGTAGACAAGGTGATTGGGCGAGTTTGATGTGTGCTATTTGTATGTCACAACCACCAGAAGCTCCAACAACTGCTTCGCCGGAGTTTAGGGATTTTGTTTCGCGGTGTTTGCAAAGAGATCCGTCGAGGAGATGGACTGCTTCTCGATTGCTTTCGCATCCTTTTCTTGGTAGAACTGTTTCTCATCATAATCAGATTCCACCAAATCTTCATCAACTACTTCCTCCACCACCAAGGCCATTATCATCTTAG 1113 0.487 MKPIQLPPPTATGSATATGSPNRPQRRRRDLTLPLPQRDTNLAVPLPLPPSGSGSGGSGSGGNGNNGGGGGNGGSATTQQLVIPFAELERLNRIGSGSGGTVYKVVHRINGRAYALKVIYGHHEESVRRQIHREIQILRDVDDPNVVKCHEMYDHNAEIQVLLEYMDGGSLEGKHIPQENQLADVARQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPTTASPEFRDFVSRCLQRDPSRRWTASRLLSHPFLGRTVSHHNQIPPNLHQLLPPPPRPLSS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4904 370 SMART serkin_6 88 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4904 370 Pfam Protein kinase domain 89 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4904 370 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Tpr4g4904 370 CDD PKc_MAPKK_plant_like 86 343 - -
Tpr4g4904 370 SUPERFAMILY Protein kinase-like (PK-like) 88 364 IPR011009 -
Tpr4g4904 370 ProSiteProfiles Protein kinase domain profile. 88 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4904 370 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 23 351 - -
Tpr4g4904 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 23 351 - -
Tpr4g4904 370 Gene3D Transferase(Phosphotransferase) domain 1 169 355 - -
Tpr4g4904 370 Gene3D Phosphorylase Kinase; domain 1 74 167 - -
Tpr4g4904 370 MobiDBLite consensus disorder prediction 1 59 - -
Tpr4g4904 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4904 Tpr-Chr4 59821426 59823177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4904 1 359 MAP Kinase Kinase Gene Family AT1G51660 68.802 2.54e-169 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Tpr4g4904 Pkinase 5.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4904 K13413 - gmx:100786390 566.229