Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4903 ATGACTATCCAAAAAATTGAAGAGTTCATTTTCAAATCCAAGCTTCCTGATATCTACATTCCAAAGCACCTTCCTCTTCATTCATATTGCTTTGAGAATTTATCAGAGTATGGATCACGTCCATGCCTCATTGATGCCCCAACCGGCGAAATCTACACCTACTATGATGTTGAACTCGCTTCACGAAGAGTCGCATCCGGTCTCAACAAATTAGGTATCGGACAAGGCGATGTCATCATGGTTCTTCTCCCTAATTGTCCGGAATTTGTGTTTTCTTTTCTCGGTGCTTCTTTTCGTGGCGCTGTAATGACCGCTGCGAATCCTTTCTTTACCTCAGCTGAAATTGCTAAACAAGCAAAAGCCTCCAATGCTAAGTTGCTTGTAACACAAGGTTGTTACTTTGACAAAGTTAAGGATTTAGAAAATGTGAAGCTGGTTTTTGTGGACTCTTTACCAGAAGGAGAAAATCATATGCATTTCCGTGAGCTGGCTCAAGCTGATGAGAATGAAATTGAAGAGGCAAAGATAAACCCTGATGATGTAGTTGCTTTGCCATATTCTTCTGGTACAACAGGACTACCTAAAGGTGTTATGCTAACACACAAAGGATTAGTGACAAGTGTAGCACAACAAGTTGATGGTGAAAATCCAAATCTATATTACCATTCTGAGGATGTGATACTCTGTGTTCTTCCCATGTTTCATATCTACTCACTCAACTCTGTTTTGCTCTGTGGTTTGAGAGCCAAAGCTTCAATTCTGTTAATGCCAAAGTTTGATATTAATGCATTTTTTAGCCTTGTTCATAAATACAAAGTCACTATTGCTCCTGTTGTGCCTCCAATTGTCTTGGCTATTTCTAAGTCACCTGAACTTGATAACTATGATCTTTCATCAATAAGAGTGTTGAAATCTGGTGGTGCTCCACTTGGTAAGGAACTTGAAGACACTGTTAGGGCCAAATTTCCTAAAGCCAAACTAGGACAGGGATATGGGATGACAGAGGCAGGTCCAGTTTTATCAATGTGTTTGTCATTTGCAAAAGAAGCAATAGATGTGAAACCGGGTGCATGTGGAACTGTTGTCAGAAATGCTGAGATGAAAATTGTTGATCCTGAAAATGATTCTTCTTTGCCTCGTAATCAACCTGGTGAAATTTGTATTAGAGGAGACCAAATCATGCAAGGTTATCTAAACGACCCAGAAGCAACAAGGAGAACAATAGACAAAGAAGGTTGGTTGCACACGGGTGACATTGGTTACATTGACAATGATGATGAATTGTTCATAGTTGATAGACTTAAAGAATTGATTAAATACAAAGGTTTTCAAGTTGCTCCAGCTGAACTTGAAGCCATTATTCTCTCCCATCCTCATATCTCTGATGTTGCTGTTGTCCCAATGCTGGATGAAGCTGCTGGTGAGGTCCCAGTTGCATTTGTTGTGAGATCAAATGGAAATATCGAGACAACTGAGGATGAAATTAAGAAGTTTGTCTCTAAACAGGTGGTGTTTTACAAAAGAATAAACAGAGTATTCTTCATTGATGCCATTCCAAAGTCACCCTCAGGCAAAATATTAAGAAAGGACCTAAGGGCTAAGCTTGCAGCTGGTGTTCCAAATTAA 1626 0.3954 MTIQKIEEFIFKSKLPDIYIPKHLPLHSYCFENLSEYGSRPCLIDAPTGEIYTYYDVELASRRVASGLNKLGIGQGDVIMVLLPNCPEFVFSFLGASFRGAVMTAANPFFTSAEIAKQAKASNAKLLVTQGCYFDKVKDLENVKLVFVDSLPEGENHMHFRELAQADENEIEEAKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYYHSEDVILCVLPMFHIYSLNSVLLCGLRAKASILLMPKFDINAFFSLVHKYKVTIAPVVPPIVLAISKSPELDNYDLSSIRVLKSGGAPLGKELEDTVRAKFPKAKLGQGYGMTEAGPVLSMCLSFAKEAIDVKPGACGTVVRNAEMKIVDPENDSSLPRNQPGEICIRGDQIMQGYLNDPEATRRTIDKEGWLHTGDIGYIDNDDELFIVDRLKELIKYKGFQVAPAELEAIILSHPHISDVAVVPMLDEAAGEVPVAFVVRSNGNIETTEDEIKKFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAGVPN* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4903 541 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 5 536 - -
Tpr4g4903 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 536 - -
Tpr4g4903 541 Pfam AMP-binding enzyme 33 440 IPR000873 -
Tpr4g4903 541 ProSitePatterns Putative AMP-binding domain signature. 184 195 IPR020845 -
Tpr4g4903 541 Pfam AMP-binding enzyme C-terminal domain 449 525 IPR025110 -
Tpr4g4903 541 Gene3D - 435 537 IPR045851 -
Tpr4g4903 541 CDD 4CL 20 531 - -
Tpr4g4903 541 Gene3D - 4 434 IPR042099 -
Tpr4g4903 541 SUPERFAMILY Acetyl-CoA synthetase-like 11 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4903 Tpr-Chr4 59811924 59816280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4903 8 503 Monolignol Biosynthesis Gene Families AT1G51680 70.495 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4903 K01904 - gmx:547944 872.078