Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4895 ATGCCTGCCGTCTATGGAGCTCGTATGACCACCTTCGAGGATTCCGAGAAGGAGAGTGAATACGGTTACGTTCGCAAGGTATCTGGACCTGTCGTCGTTGCAGATGGAATGAATGGGGCTGCTATGTATGAACTGGTGCGTGTTGGTCGTGATAATCTCATCGGTGAAATTATTCGTTTGGAAGGGGATTCTGCCACTATCCAAGGTTCCTTCTGCTATCACTGCAATATGATGTTTTCAATTTCAGATACATGTTTGTTTCTTTTCTTCATTTTTAATCACAAAATTCATTGCTTGTCTTCAATTTCAGTTTACGAGGAAACTGCTGGGTTAATGGTTAACGATCCAGTGTTACGTACACACAAGCCTTTGTCTGTCGAGTTGGGACCTGGAATATTGGGGAATATTTTTGATGGAATTCAGAGGCCTTTGAAAACTATTGCAAAAATATCTGCTGATGTCTATATTCCCCGTGGTGTCTCTGTTCCTGCACTTGACAAAGATACACTTTGGGAATTTCAGCCTAAGAAAATTGGTGAAGGAGACCTATTAACCGGTGGAGACTTATATGCTACTGTTTTCGAGAACAGTTTAATGGAACACCGTGTTGCACTTCCTCCTGATGCCATGGGAAAGGTTACCTATGTAGCACCTGCTGGCCAATATTCCTTGAAGGACACTGTATTGGAGCTTGAGTTTCAAGGTGTCAAAAAGAAGTTCACCATGCTTCAGAGTTGGCCTGTACGTACACCAAGGCCTGTTGCATCAAAACTTGCTGCTGATACTCCTCTTCTTACTGGTCAGCGTGTTCTTGACGCTCTCTTCCCCTCAGTACTTGGTGGGACTTGTGCCATTCCTGGAGCTTTCGGTTGTGGCAAAACAGTCATTAGTCAGGCTCTTTCTAAGTATTCTAATTCCGATGCCGTTATTTACGTTGGTTGTGGAGAACGTGGAAATGAAATGGCAGAGGTTCTGATGGACTTTCCACAACTCACAATGACATTACCTGATGGTCGTGAAGAGTCTGTCATGAAGCGTACAACACTTGTGGCTAACACTTCAAACATGCCAGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATCACTTTAGCCGAGTATTTCAGAGATATGGGTTACAATGTCAGTATGATGGCAGATTCAACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCAGGGCGACTGGCGGAAATGCCTGCTGATAGTGGATATCCTGCTTACCTTGCTGCACGTTTAGCCTCTTTCTATGAACGTGCTGGGAAAGTAAAATGTCTTGGAGGTCCTGAACGGACAGGTAGTGTAACCATTGTTGGTGCTGTTTCTCCACCTGGAGGAGATTTCTCAGATCCCGTGACATCTGCAACCCTCAGCATAGTTCAGGTTTTCTGGGGTTTGGACAAAAAGCTTGCACAGAGGAAGCACTTTCCTTCTGTTAACTGGCTTATATCTTATTCAAAATACTCGACGGCACTTGAATCCTTTTATGAGCAATTTGATCCAGATTTCATAAACATTAGGACAAAGGCTCGTGAAGTGCTGCAAAGAGAAGATGATCTGAATGAAATTGTCCAGCTTGTAGGAAAGGATGCTTTAGCTGAAGGAGATAAGATAACCCTAGAAACTGCAAAACTTTTGAGAGAGGATTACCTTGCTCAAAATGCTTTTACACCATATGACAAGTTCTGTCCCTTTTACAAGTCTGTCTGGATGATGCGCAACATTATTCATTTCTACAATTTGGCAAATCAGGCAGTAGAGAGGGGAGCTGGTACTGATGGTCAGAAGATAACTTACACCGTCATCAAACATCGTTTGGGAGATCTCTTCTATCGTTTAGTGTCCCAGAAATTTGAGGACCCAGCTGAAGGGGAAGCTGCTTTGGTTGCCAAATTTAATCAGTTACACGAGGACCTGACAAATGGTTTCCGCAACCTTGAGGATGAAGCCCGATAA 1977 0.436 MPAVYGARMTTFEDSEKESEYGYVRKVSGPVVVADGMNGAAMYELVRVGRDNLIGEIIRLEGDSATIQGSFCYHCNMMFSISDTCLFLFFIFNHKIHCLSSISVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKISADVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMEHRVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKKFTMLQSWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVIYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGTDGQKITYTVIKHRLGDLFYRLVSQKFEDPAEGEAALVAKFNQLHEDLTNGFRNLEDEAR* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4895 658 CDD ATP-synt_V_A-type_alpha_N 21 122 - -
Tpr4g4895 658 CDD V_A-ATPase_A 123 495 - -
Tpr4g4895 658 Coils Coil 636 656 - -
Tpr4g4895 658 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 68 IPR004100 GO:0046034|GO:1902600
Tpr4g4895 658 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 100 646 IPR005725 GO:0033180|GO:0046961|GO:1902600
Tpr4g4895 658 ProSitePatterns ATP synthase alpha and beta subunits signature. 484 493 IPR020003 GO:0005524
Tpr4g4895 658 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 506 589 - -
Tpr4g4895 658 Gene3D - 494 646 IPR024034 -
Tpr4g4895 658 Gene3D - 169 240 - -
Tpr4g4895 658 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 101 657 IPR022878 GO:0046034|GO:0046961
Tpr4g4895 658 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 68 IPR022878 GO:0046034|GO:0046961
Tpr4g4895 658 Gene3D - 13 70 IPR023366 -
Tpr4g4895 658 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 101 657 - -
Tpr4g4895 658 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 68 - -
Tpr4g4895 658 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 267 493 IPR000194 GO:0005524
Tpr4g4895 658 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 68 IPR036121 GO:0046034|GO:1902600
Tpr4g4895 658 Hamap V-type ATP synthase alpha chain [atpA]. 19 657 IPR022878 GO:0046034|GO:0046961
Tpr4g4895 658 Gene3D - 126 492 IPR027417 -
Tpr4g4895 658 Gene3D - 97 124 - -
Tpr4g4895 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 497 IPR027417 -
Tpr4g4895 658 Pfam ATPsynthase alpha/beta subunit N-term extension 137 258 IPR031686 -
Tpr4g4895 658 CDD ATP-synt_V_A-type_alpha_C 510 616 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4895 1 658 Primary Pumps ATPases(2) AT1G78900 88.146 0.0 1190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4895 K02145 - gmx:100775727 1190.25