Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4892 ATGGATATCGATGGCTCTAACTCTTATATCATGTCAGATACTTCTGTGGCCAATTCTGAACTATTCAAGAATGCACGAGTTTCTCCTACATCTTTGACTTATTATGGATTTTGCATGGGAAATGGAAACTACACAGTAAATCTACATTTTTCGGAAATCATTTTCACTGATGATCAAACATATAACAGCCTAGGAAGGCGTATATTCGATATCTATATTCAGGGAGAGTTAGTACAAAAGGACTTCAATATTGCAAAAGAAGCCGGAAGAATTGGTAAGGCAATCACGAAACCATTCACTGCTGTTGTAAGTCATAATACCTTGGAGATTCGCTTATATTGGGCCGGGAAAGGGACAACTAGTATACCATCTAGAGGAGTATATGGTCCTCTTATATCAGCAATAACTGTTGAACCAGATTTTACCCCTCCTTCCGAAAGTGGAAGTAGCAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGCTGCAGTAGCCATTGTTATCATCCTATTATTTGTTATTCTTCGGCGAAAAGGCTATTTTGGAAAGAAAAGCTCTTTAGAAAGAGAGGTAAAGGGTTTAGACCTACAAATGAGTTTATTTAATGTAAGACAAATCAAAGGAGCAACAAATAACTTTGACATTGCCAATAAGATTGGAGAAGGAGGATTTGGTCCAGTATACAAGGGGCGTCTATCAGATGGTACATTGGTAGCAGTCAAGCAACTTTCTGCTAAATCAAAGCAAGGGAATCGCGAATTTTTAAATGAAATCGGCATGATTTCAGCGTTGAACCACCCTCATCTTGTTAAACTCTATGGATGTTGTGTGGAAGGAGATCAGTTAATGTTAATATATGAATATTTGGAAAATAATAGTCTTGCTCGCGCTTTATTTGGGGCTGCAGAACACCAAATAAAATTGGATTGGCCAACAAGATACAAGATTTGTGTTGGTATTGCTAGAGGTTTAGCATATCTCCATGAAGAATCAAGATTGAAGGTTGTTCATAGAGACATCAAGGCAACTAATGTGTTGCTTGATAAAGATCTCAATCCGAAGATATCTGATTTTGGTTTGGCCAAACTCGATGAAGAGGAGAACACTCACATTAGCACTCGAATCGCCGGGACATATGGATATATGGCTCCAGAATATGCTATGCATGGTTATTTGACCGACAAAGCAGATGTCTATAGTTTTGGAATCGTCGCCTTGGAAATCTTACATGGTAGTAACAATACCACTCTTCGACAAAAAGGATCAGAAGCATTCCATCTTCTTGATTGGGCACATGTCTTGAAAGAGGAAAATAATCTATTAGAGCTAGTTGATAAAAGATTGGGTTCAAATTTCAACAAACAAGAAGCAATGGTAATGATAAATGTAGCACTATTATGCACTAATGTAACTTCAGCACTTAGGCCAGCAATGTCTTCCGTGGTAAGCATGTTAGAAGGTAAAATTGCTATTAAAGAACTGATTTTAGAGTCAAGTGAAGTGTTGGATGAGAAAAAAATGGAAGCAATGAGACAATATTATAAAGACCATAGTATATCAATGGAAGAAGGACCATGGACTGCTACATCTTCTTCAGTAGCTACTGATCTTTATCCTGTAGATTCTTCTTACTTGGAGAAAAGAGTTTAG 1650 0.377 MDIDGSNSYIMSDTSVANSELFKNARVSPTSLTYYGFCMGNGNYTVNLHFSEIIFTDDQTYNSLGRRIFDIYIQGELVQKDFNIAKEAGRIGKAITKPFTAVVSHNTLEIRLYWAGKGTTSIPSRGVYGPLISAITVEPDFTPPSESGSSSISAGAVVGIVAAVAIVIILLFVILRRKGYFGKKSSLEREVKGLDLQMSLFNVRQIKGATNNFDIANKIGEGGFGPVYKGRLSDGTLVAVKQLSAKSKQGNREFLNEIGMISALNHPHLVKLYGCCVEGDQLMLIYEYLENNSLARALFGAAEHQIKLDWPTRYKICVGIARGLAYLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDEEENTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEILHGSNNTTLRQKGSEAFHLLDWAHVLKEENNLLELVDKRLGSNFNKQEAMVMINVALLCTNVTSALRPAMSSVVSMLEGKIAIKELILESSEVLDEKKMEAMRQYYKDHSISMEEGPWTATSSSVATDLYPVDSSYLEKRV* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4892 549 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 509 - -
Tpr4g4892 549 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 509 - -
Tpr4g4892 549 Gene3D Phosphorylase Kinase; domain 1 180 288 - -
Tpr4g4892 549 Gene3D - 2 139 - -
Tpr4g4892 549 CDD STKc_IRAK 219 487 - -
Tpr4g4892 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Tpr4g4892 549 SUPERFAMILY Protein kinase-like (PK-like) 197 497 IPR011009 -
Tpr4g4892 549 Pfam Protein tyrosine and serine/threonine kinase 215 484 IPR001245 GO:0004672|GO:0006468
Tpr4g4892 549 Pfam Malectin domain 15 135 IPR021720 -
Tpr4g4892 549 SMART serkin_6 213 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4892 549 ProSiteProfiles Protein kinase domain profile. 213 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4892 549 Gene3D Transferase(Phosphotransferase) domain 1 289 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4892 Tpr-Chr4 59734165 59737047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4892 12 515 Receptor kinase-like Gene Family AT1G53420 62.868 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr4g4892 PK_Tyr_Ser-Thr 4.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4892 - - cam:101501658 852.047