Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4885 ATGAAAGTTGGTGGGATTTCCATATCGACCCCAAAGCTACCAATGCCTATCGATCTCAATAGCAGCACTGATGAATATAATTCATTTCACCGAACAAAGACAACGACGTCACACAAAAAATCATTATTGATAGAAGCCGGAGAATCCTCGGACGGAAGCAGGAAGACGAGCAAGGTCCCGAAAGGATACATTGCTGTTTATGTCGGGCTTGAATGTAGAAGGTTTGTGATTCCAATAAGTTTCTTGAGCATGCCTGAGTTGAAGGGTTTGATGGATGACGTGGCTGAGGAGTTTGGTTGTGATTATCATGCTGATGGTGCTCTTCATATTCCATGTGATGAAGATTATTTTCGCAATGTTTTGATTAATTGTTTTGCAACACAACGAAGGGTATCTTCTAAGAATTATAAGATCAAACTTGGTAGTAAGATTCCCTTAATAGACAGTCAATAG 453 0.3996 MKVGGISISTPKLPMPIDLNSSTDEYNSFHRTKTTTSHKKSLLIEAGESSDGSRKTSKVPKGYIAVYVGLECRRFVIPISFLSMPELKGLMDDVAEEFGCDYHADGALHIPCDEDYFRNVLINCFATQRRVSSKNYKIKLGSKIPLIDSQ* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4885 150 Pfam Auxin responsive protein 39 121 IPR003676 GO:0009733
Tpr4g4885 150 PANTHER OS02G0143300 PROTEIN 39 134 - -
Tpr4g4885 150 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 39 134 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4885 Tpr-Chr4 59671452 59671904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4885 59 121 Calmodulin-binding Proteins AT3G43120 52.381 1.61e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4885 K14488 - mtr:MTR_4g005310 216.468