Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4868 ATGGTGAAATCGAACGTGGAAAAAACTGCTGCGGAAAGAAGTGATTCTTCGTTATTCAGAGGAATAAGGAAGAGGAAGTGGGGAAAATGGGTGTCGGAAATCAGACTACCAAACAGCCGCCAAAGAATATGGTTAGGTTCCTATGACACTGCTGAAAAGGCGGCGCGTGCATTTGACGCGGCAACGTTATGCTTACGTGGCAGTGGTGCTAAGTTTAATTTCCCTAATAACCCACCGGATATTCCCGGAGCAAGGTCCATGACCCATTCTGAGATTCAAGCTGCCGCAGCCCGTTTTGCCAATTTGGATATCCATAATGAGAAACTGTGTCGACCCGATAACGAAATTATTGAAACACTGTCTTCTTCGGAGGTGACGGTATCGTTGCCGTCTCCGGCACTCTCTGACACGACGGTTCAGGCGGAGAGTGACATTACCGATAACGGGTTGTTTAGGGACCTGTTTTCAGAAACCGGGTCAGGTTACTCAATGTTTCCGGGTTTTGATGATTTTAGTGGTGAATTTTATGTGCCTGAGATGACAAATTTTGATTATGAAGAAGAGAACATGGATGGGGTGATAGTTTTGGATACCTTCTTATGGGATTTCTAA 612 0.4542 MVKSNVEKTAAERSDSSLFRGIRKRKWGKWVSEIRLPNSRQRIWLGSYDTAEKAARAFDAATLCLRGSGAKFNFPNNPPDIPGARSMTHSEIQAAAARFANLDIHNEKLCRPDNEIIETLSSSEVTVSLPSPALSDTTVQAESDITDNGLFRDLFSETGSGYSMFPGFDDFSGEFYVPEMTNFDYEEENMDGVIVLDTFLWDF* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4868 203 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tpr4g4868 203 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Tpr4g4868 203 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Tpr4g4868 203 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 203 - -
Tpr4g4868 203 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Tpr4g4868 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 203 - -
Tpr4g4868 203 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Tpr4g4868 203 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Tpr4g4868 203 PIRSF PTI6 3 171 IPR017392 GO:0003700
Tpr4g4868 203 PIRSF PTI6 93 196 IPR017392 GO:0003700
Tpr4g4868 203 Pfam AP2 domain 19 67 IPR001471 GO:0003700|GO:0006355
Tpr4g4868 203 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4868 Tpr-Chr4 59339953 59340911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4868 17 203 AP2-EREBP Transcription Factor Family AT1G19210 45.274 1.45e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g4868 AP2 4.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4868 - - mtr:MTR_2g043040 292.352