Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4866 ATGTATATATTTTTTATGAAGTTTCTTCATAATGTATTTCAGATATCTCAAGAGACCCAAATGGATCATGACACCAAGATATCTCAGGTGACTGAAATCAACGATGGCATAAAGGTTTTGGCAGAAAACCAAGAGAAATCTCAAGATACCCAAATGCTTCAAGACAATAAGGAAAAGAAGCCTATTGAGTATGATTATGATGCTGTTAAAGATGTTACCAAGAAGAAAGAAATATGGAGACTAGGGGTGATTTTGGATGACATGTGGATTGTGTCGAAAGGAGAATCTGAAGTGATAATGGAAATGTTGCTCAGGGATATAAAGGGATATACTATCCAAGCGACTGTGATGACTGATGATATTGAGAAGTGGAAAGAACAACTTGCACAAGGCCAGACGTATTCTATGCGTAATTTTAGGGTTGCAGACAATGATTCACAATATAAGATGACTCCTCACAAATTTCGATTAATATTTGTTGGTGCAACAAGAGTTACTGCAGTTGAAATTCCAGAAATACCAAAAACACATTTTTACTTCAAGGATTTTGAAGAGATCTCTAATGGGACTTTTCGCACTGATCTGTTAGTTGATGCTATAGGAGTTGTTAACTCTATTGGGAAGATTGTTACTGCAACTACAACAAGGAAAGCTAATGTCGCTTTTACCATCAAAGATCAGCGTGATAAGGAACTTGATTGTACTCTGTGGGATTTAGTATCTGACCAATTTATCAATGGTTACAACCAACGATCTAATAATGATCCATGTGTCATCATTATGAGACATGTTCGAGTCAGAGAAGCACAAGGATCATACCCCTTGCAATTAACAAATGTGTGGAATGGAACTAAGATTCTATTTGATACATCGATACCTGAAATAGAAAAATTTCGTGCCAGCTTGCCCAAGGAAACTGTTTATGCGTCGTAA 933 0.3644 MYIFFMKFLHNVFQISQETQMDHDTKISQVTEINDGIKVLAENQEKSQDTQMLQDNKEKKPIEYDYDAVKDVTKKKEIWRLGVILDDMWIVSKGESEVIMEMLLRDIKGYTIQATVMTDDIEKWKEQLAQGQTYSMRNFRVADNDSQYKMTPHKFRLIFVGATRVTAVEIPEIPKTHFYFKDFEEISNGTFRTDLLVDAIGVVNSIGKIVTATTTRKANVAFTIKDQRDKELDCTLWDLVSDQFINGYNQRSNNDPCVIIMRHVRVREAQGSYPLQLTNVWNGTKILFDTSIPEIEKFRASLPKETVYAS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4866 310 CDD RPA1_DBD_B_like 198 303 - -
Tpr4g4866 310 CDD RPA1_DBD_A_like 80 165 - -
Tpr4g4866 310 Gene3D - 60 169 IPR012340 -
Tpr4g4866 310 SUPERFAMILY Nucleic acid-binding proteins 64 168 IPR012340 -
Tpr4g4866 310 SUPERFAMILY Nucleic acid-binding proteins 178 307 IPR012340 -
Tpr4g4866 310 Gene3D - 172 308 IPR012340 -
Tpr4g4866 310 Pfam Domain of unknown function DUF223 101 196 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4866 Tpr-Chr4 59313046 59314688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4866 93 299 Core DNA Replication Machinery Family AT5G45400 21.198 9.48e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4866 - - lang:109343677 185.267