Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4857 ATGGTGAAATCAAACGTGGAAAAAACTGCGGCGGAAAGAAGTGATTCTTCATTATACAGAGGAGTAAGAAAGAGGAAGTGGGGAAAATATGTTTCTGAAATTAGATTACCAAACAGCCGCCAAAGAATATGGTTGGGATCATTTGACACAGCCGAAAAAGCGGCGCGTGCATTCGACGCTGCTACTTTCTGCTTACGTGGCAGTGGTGCTAAGTTTAATTTCCCTAGTAATCCGCCGGATATTCCCGGGACAAGCTCCATGACCCATTCTGAGATTCAAGCTGCTGCAACCCGTTTTGCATATTCGGAGCCCCGTAATGAGAATTCGGGTCGACCCGATAATGAAATTATTGAAACACCGTCCTCGTCTGAGGTAACTGCATTGTTGCCTATGGAGATGCCGTCTCCTGCTCTCTCCGAGACAACGGTTCAGACGGAGAGTGACGTTACAGATAATGGGTTGTTCAAGGACCTGTTTTCAGAAACTGGGTCGGGTTACTCAATGTTTCCGGGTTTTGATGATTTTTGTGGTGAATTCTATTTGCCTGAGATGACAAATTTTGATTACGAAGAAGAGAACATGGATGGGGTGATAGTTTTGGATACCTTCTTATGGGATTTCTAA 624 0.4455 MVKSNVEKTAAERSDSSLYRGVRKRKWGKYVSEIRLPNSRQRIWLGSFDTAEKAARAFDAATFCLRGSGAKFNFPSNPPDIPGTSSMTHSEIQAAATRFAYSEPRNENSGRPDNEIIETPSSSEVTALLPMEMPSPALSETTVQTESDVTDNGLFKDLFSETGSGYSMFPGFDDFCGEFYLPEMTNFDYEEENMDGVIVLDTFLWDF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4857 207 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tpr4g4857 207 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Tpr4g4857 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 207 - -
Tpr4g4857 207 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Tpr4g4857 207 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Tpr4g4857 207 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Tpr4g4857 207 PIRSF PTI6 120 195 IPR017392 GO:0003700
Tpr4g4857 207 PIRSF PTI6 3 176 IPR017392 GO:0003700
Tpr4g4857 207 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 207 - -
Tpr4g4857 207 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Tpr4g4857 207 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Tpr4g4857 207 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4857 Tpr-Chr4 59143470 59144757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4857 17 207 AP2-EREBP Transcription Factor Family AT1G19210 44.878 4.78e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g4857 AP2 8.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4857 - - mtr:MTR_2g043040 306.99