Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4856 ATGGTGAAAACAAATTCGGAGAAACCTACGGCGGAACGAAGTGATGCTTCATTATTCCGAGGAGTGAGGAAGAGAAAATGGGGAAAATATGTATCGGAAATTCGGCTGCCAAACAGCCGCCAAAGAATTTGGTTAGGTTCTTATGATTCCGCCGAGAAGGCGGCGCGTGCTTTCGACGCGGCGACGTATTGCTTACGTGGCAGTGGTGCTAAGTTTAATTTCCCCGGTGATCCGCCGAGTATTGCCGGAGGAAGGTCAATGACACCTTCTCAGATTCAAGAAGCTGCAGCCCGTTTTGCTAATTCGGATATCCATAATGAGAAATCGGGTCGACCCGATAATGTGAAAGTGGAATCTGAGTCGTCGGAGGAGGGGACTTTAATGTTGCCTATGGAATCACCGTCTCCGGCACTGTCAGATGCGACGGTTCAGACTGATTTTGACTCTAAGCAAAATGGGTTGTTTTCAGATTTGGTTGGTGTAAATGGGTCGGGTTATAGTGGACCCGATTACAATGTTTTTCCGGGTTTTGATGATTTTGGTGGAGATTTCTATGTGCCACCAAGTTATGATTATGGAGAAGAGAACATGGATGGGTTGATAATTCATGATTCCTTTTTGTGGAATTTCTAA 633 0.4566 MVKTNSEKPTAERSDASLFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAATYCLRGSGAKFNFPGDPPSIAGGRSMTPSQIQEAAARFANSDIHNEKSGRPDNVKVESESSEEGTLMLPMESPSPALSDATVQTDFDSKQNGLFSDLVGVNGSGYSGPDYNVFPGFDDFGGDFYVPPSYDYGEENMDGLIIHDSFLWNF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4856 210 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Tpr4g4856 210 MobiDBLite consensus disorder prediction 103 139 - -
Tpr4g4856 210 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Tpr4g4856 210 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Tpr4g4856 210 MobiDBLite consensus disorder prediction 104 120 - -
Tpr4g4856 210 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tpr4g4856 210 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Tpr4g4856 210 Pfam AP2 domain 19 67 IPR001471 GO:0003700|GO:0006355
Tpr4g4856 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 210 - -
Tpr4g4856 210 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Tpr4g4856 210 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Tpr4g4856 210 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 4 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4856 Tpr-Chr4 59127031 59128102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4856 17 210 AP2-EREBP Transcription Factor Family AT1G19210 45.771 6.37e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr4g4856 AP2 5.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4856 - - mtr:MTR_2g043040 263.077