Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4846 ATGGCTTCTTCTCAGTTAACAGCATCATCAATTTCTACGAGGAACGTTTTTGCATCCTTTGAAGGACTTCGACCTGTTCAATTTCATTGTCCCAGACATGTTACAATTGGTAATCCTGCACGTAGGTCGTTTAAGGGTCTTGTTGTCAAAGCCTCTACTGCTGTTGCTCCAAAGTACACCACAATCAAGCCTCTGGGAGACAGGGTACTTCTAAAAATTAAGGAAGCAGAAGAGAAAACACAAGGTGGGATTTTGCTTCCATCAAATGCTCAAACAAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGAGAAGGAAAGACACTTGGGAAGAACCAAGTTGAAAATAGTGTGAAGCCGGGTGCACAAGTTGTGTATTCAAAGTATGCAGGTACTGAGGTTGATTTCAATGGTGAAAAGCATCTTATTTTGAAGGATGATGACATTGTTGGTATCCTTGAAACCGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTTTTGATACAGATTGAAAAAGCTGAAGAAAAAACTGCCGGCGGTTTGTTTCTTACCCAGGCAACCAAGGATAAACCTTCCTTTGGAACAGTTGTAGCAGTTGGTCCCGGCTTTGTGGATGAGGAAGGCAATAGAAAACCTTTGCCTGTTACTTCCGGGAACACAGTTTTGTACTCAAAATACGCCGGTAATGACTTCAAGGGCAAAGATGGTTACGAGTACATTACCTTGAGGAGTTCCGATATCATTGCTATACTCTCCTAG 762 0.4239 MASSQLTASSISTRNVFASFEGLRPVQFHCPRHVTIGNPARRSFKGLVVKASTAVAPKYTTIKPLGDRVLLKIKEAEEKTQGGILLPSNAQTKPQGGEVVAVGEGKTLGKNQVENSVKPGAQVVYSKYAGTEVDFNGEKHLILKDDDIVGILETDDIKDLKPLNDRVLIQIEKAEEKTAGGLFLTQATKDKPSFGTVVAVGPGFVDEEGNRKPLPVTSGNTVLYSKYAGNDFKGKDGYEYITLRSSDIIAILS* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4846 253 PANTHER GROES CHAPERONIN 1 253 - -
Tpr4g4846 253 Hamap Co-chaperonin GroES [groES]. 61 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 CDD cpn10 61 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 Hamap Co-chaperonin GroES [groES]. 159 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 ProSitePatterns Chaperonins cpn10 signature. 160 184 IPR018369 GO:0005524|GO:0006457
Tpr4g4846 253 Gene3D GroES chaperonin 155 253 IPR037124 GO:0006457
Tpr4g4846 253 Gene3D GroES chaperonin 55 154 IPR037124 GO:0006457
Tpr4g4846 253 SMART Cpn10_2 159 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 SMART Cpn10_2 61 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 CDD cpn10 160 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 SUPERFAMILY GroES-like 60 153 IPR011032 -
Tpr4g4846 253 ProSitePatterns Chaperonins cpn10 signature. 62 86 IPR018369 GO:0005524|GO:0006457
Tpr4g4846 253 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 PIRSF Cpn21 1 253 IPR017416 GO:0006457|GO:0046914|GO:1901671
Tpr4g4846 253 Pfam Chaperonin 10 Kd subunit 62 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 Pfam Chaperonin 10 Kd subunit 160 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 PRINTS 10kDa chaperonin signature 62 77 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 PRINTS 10kDa chaperonin signature 84 105 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 PRINTS 10kDa chaperonin signature 118 130 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 PRINTS 10kDa chaperonin signature 139 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Tpr4g4846 253 SUPERFAMILY GroES-like 159 252 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4846 Tpr-Chr4 58770071 58773733 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4846 1 253 Calmodulin-binding Proteins AT5G20720 68.482 4.86e-122 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4846 K04078 - gmx:100814751 393.66