Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4843 ATGAAGGCTCCTTCTAATGGTTATTTGCCTAATTCTGGTGAAGGTGAAAGGAAAGCCATCAATTCAGAGTTATGGCATGCTTGTGCCGGGCCCTTGGTTTCTATACCTCCCGTTGGAAGTCTTGTTGTTTACTTTCCTCAAGGACATAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCAGATTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCGCTACATGCTGACCCTGAAACTGATGAGGTATATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGCTTGCTTCAGACATGGGACTAAAACAAAACCAGCAACCAACTGAATTCTTTTGCAAAACACTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCAGTACCTCGTAGAGCTGCCGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCACCAGCTCAAGAAATAGTTGCCAAAGATTTGCATGACACTACATGGACGTTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGTATGAAAAGGCTCTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTTTAGGTATAAAGAGATCCAGTAGACAGCAACCAGCGCTATCTTCATCGGTAATATCAAGTGATAGCATGCATATTGGCATTCTTGCCGCTGCGGCTCATGCTGCTTCGAATAATAGCCCATTTACTGTATTTTATAATCCCAGGACTAGCCCCTGTGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCACTGTACACTCATGTTTCTCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGATTCAGGAGTACGCAGATATATGGGCACAATCACTGGGATCAGTGACTTGGATCCTGCCAGATGGAAAAATTCACAATGGCGTAATCTTCAGGTTGGATGGGATGAATCTACAGCTGGTGAGCGCCCAAGCAGAGTTTCAATTTGGGATATTGAACCTGTTGTGACCCCTTTCTACATTTGCCCCCCTCCATTTTTTAGGCCAAAGTTCCCCAAGCAACCAGGAATGCCAGAAGACGAGTCTGAAATAGAAAATGCTTTCAAGAGAGCTATGCCGTGGCTTGGAGATGAACTCGGCATGAAAGATGCCTCAAGTTCAATCTTCCCCGGTTTGAGTTTAGTCCAATGGATGAGCATGCAGCAGAATAATAATCAGTTTTCTGCTCCTCAATCAGGACTTTTACCTCCATCCATGCTTTCATCAAACACAATGCATGCTAACCTTAACACCGATGATCCATCCAAGATATTGAACTTTCAATCCCCTGCTGGACTCTCTGCTCCAAGTCTTCAATTTAACAAACCTAATTTACCAAACCAAGTCAATCAATTGCAACAGTCGCCGAATGCGTGGTCTCAACAGCAACAACAGCAGCAGAAGATGCTGTCGATGTTGCAAACACCGTTAAACCAGCTGCAGCAACAACAACAGCAGCAGCAGAGGCAACATCAACTGGCTGGACCACAAAACCTGCCGCAGACTCAGCAACAACAGCCCCAACTGACTCAACCGAACGCACATCAGCCTCAACAACAGCAACACCAACAACTACAACAACAGCAACACCAACAGCCGAATCAAAACACCACTATGAATAATGGAACAGTTGGTTCTAACCAGATGCCGAATCAGTGTGTACAGCAACCTGTAACGTACTCTCCCCTTCAGCAACAGTTGCTCTCAGGAAATGTCCAAACCCAACAAAATTTCCAGTCAGTTGGCAAGAACGGGTTGATAATGACATCCTTACCGCAGGACTCGCAATTTCAGCAACAGATAGACCAACAACAACAAGCTGGTCTCTTACAGCGGCAGCAGCAGCAGCAACAACAAACACAGTTGCAACAATCTTCATTACAGTTATTGCAACAAAGCATGTTACAAAGAGCGCCACAGCAATCACAAATGACTCAGATTTCGCCGAAAAACACCTCAGACCAACAACAACAGATGCAGTTGCTACAGAAGTTGCAGCAACAACAGCAACCACTTTCCACATCTTCCCCACTTTCGCAGTCTCAGCTTCTGCAGCAACAAAACCAGCAACCGCAGCAGCCTATGTCACAGCATCATCAGCCTCAACAGCCGCAACAGCTCGGTAACAATGCATTCTCAATGGAGAAGCTTCTCAACAACAATTACTCTTCTTCAGCTGTCATGCATCCGCAGCAGCTTCCTGTGAACAATCACCATAATACACAAAAATCACCGACAAATACTAGAGCTCCTTCCGCTTTTACAGATGGAGATGCCCCATCATGCTCAACTTCGCCATCTACTAATAACTGTCAGACATCGCCTCCAAACCTCCTGAAAAGAAATCAACCAGAGCCATTTGGAGGGCCTTTGATAGTTGAAACCAATACTAATATGATGCAGGAGCTTCAAAGTAAGTCTGACATGCAGAACAAACACGAATTACAAGGTGTAAAAGGACCTGACAAGCAAAAGTACAAAGGGGCTATCAATGATCAGATGGAGGCTTCTTCCGGAACATCTTACGGTATTGATCCTGGCAACATCCACCAAAACTTTCCACTTTCCAACTTCTACATGGATAGTGATGTCCACTCGCAACAACCAAGAAGTAACTTACCATTTGCCTCTAACCTTGATGGATTAACACCTGATCCTTTGCTCTCACGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTATGGTGGTGCTCCAAGAGATATTGAAACTGAGCTGTCCACTGCTGATATTAGTTCACAGTCGTTTGGTGTGCCGAACATGTCTTTTAAGCCAGGATGCTCAAGTGATATTGCTATCCCTGATACTGGCGTTATGAATAATGGCTTGTGGTCTAATCAGGCTCAGCGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCGGTCGGAAGATGTATTGATGTCACCCGTTACAAAGGATATGAAGAACTCCGGAATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGACTGGAAACTAGTATATGTGGATCACGAAAACGACATTCTTCTCGTCGGCGATGACCCTTGGGAAGAATTTGTAAACTGTGTTCAAAGCATAAAGATACTATCATCTGCCGAAGTACAACAAATGAGCCTAGAAGGCGACTTAGGTTATGTTCCAATCACCAATCAAGCTTGTAGTGGTTCAGAAAGTGGTAATGCATGGAGGGCACAACAGTATGATGATAACTCTGCAGCCTCGTTTAATCGATAA 3378 0.439 MKAPSNGYLPNSGEGERKAINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSMKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTVFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPARWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNNQFSAPQSGLLPPSMLSSNTMHANLNTDDPSKILNFQSPAGLSAPSLQFNKPNLPNQVNQLQQSPNAWSQQQQQQQKMLSMLQTPLNQLQQQQQQQQRQHQLAGPQNLPQTQQQQPQLTQPNAHQPQQQQHQQLQQQQHQQPNQNTTMNNGTVGSNQMPNQCVQQPVTYSPLQQQLLSGNVQTQQNFQSVGKNGLIMTSLPQDSQFQQQIDQQQQAGLLQRQQQQQQQTQLQQSSLQLLQQSMLQRAPQQSQMTQISPKNTSDQQQQMQLLQKLQQQQQPLSTSSPLSQSQLLQQQNQQPQQPMSQHHQPQQPQQLGNNAFSMEKLLNNNYSSSAVMHPQQLPVNNHHNTQKSPTNTRAPSAFTDGDAPSCSTSPSTNNCQTSPPNLLKRNQPEPFGGPLIVETNTNMMQELQSKSDMQNKHELQGVKGPDKQKYKGAINDQMEASSGTSYGIDPGNIHQNFPLSNFYMDSDVHSQQPRSNLPFASNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSSDIAIPDTGVMNNGLWSNQAQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLEGDLGYVPITNQACSGSESGNAWRAQQYDDNSAASFNR* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4843 1125 Gene3D - 992 1086 - -
Tpr4g4843 1125 CDD B3_DNA 125 217 IPR003340 GO:0003677
Tpr4g4843 1125 Gene3D - 289 360 - -
Tpr4g4843 1125 MobiDBLite consensus disorder prediction 515 569 - -
Tpr4g4843 1125 MobiDBLite consensus disorder prediction 790 815 - -
Tpr4g4843 1125 PANTHER AUXIN RESPONSE FACTOR 19 1 1111 - -
Tpr4g4843 1125 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1111 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr4g4843 1125 SMART B3_2 126 228 IPR003340 GO:0003677
Tpr4g4843 1125 Gene3D - 123 227 IPR015300 -
Tpr4g4843 1125 MobiDBLite consensus disorder prediction 668 740 - -
Tpr4g4843 1125 MobiDBLite consensus disorder prediction 790 819 - -
Tpr4g4843 1125 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Tpr4g4843 1125 Pfam AUX/IAA family 994 1083 IPR033389 -
Tpr4g4843 1125 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Tpr4g4843 1125 SUPERFAMILY CAD & PB1 domains 1010 1075 - -
Tpr4g4843 1125 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Tpr4g4843 1125 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr4g4843 1125 ProSiteProfiles PB1 domain profile. 997 1081 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4843 Tpr-Chr4 58528331 58535828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4843 1 490 B3 DNA Binding Superfamily AT1G19220 81.136 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr4g4843 AUX_IAA 5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4843 K14486 - gmx:100804628 1587.01