Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4840 ATGGGAACAACGAAGAACACCAAAACCCAAGTAATCAAAAACAAACAAAACGACAAGAAAACCATCGCTGATGGAACCAACAAGGAAACCAAATCAGACAACAATAATGTTTTTGCTTCTTGTTCATTCTCTAGTCTTGGTCTTCACCCAACCTTATGTGATCAACTTCATGAAAGAATGGGTTTTGAAGGTCCAACATTAGTTCAAGCTCAAGCTATTCCTGTTGTTCTATCTGGCCGTCATGCACTGGTTAATGCTGCTACGGGCACTGGGAAGACTATTGCATACCTGGCTCCAATAATTCATCATTTGCAGAGTTATGAGAAGCGAATTCAGCGCACTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGTTATGTTTGCAGGTTCATGAAATTCTTCAGAAATTATTGCACCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAGTAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGTATATCAATTCTTATTGCAACCCCTGGGCGCCTTTTAGACCACTTGAAGAATACAACATCATTCTTGTACACAAATTTGCGATGGATAATTTTTGATGAAGCTGATCGTATTTTGGAACTAGGATTTGGGAAAGAGATACAAGACATACTAAATCTTTTAGGTTCAACGAAAACAGGTCACAATGACCAAGCGAATGCAGTTCCAAGTCCCTCTAAATTTCAAAGACAGAACCTGCTTTTGTCAGCCACCTTAAACGAGAAAGTAAACCACCTTGCTAAAATTAGCTTAGAGGATCCAGTGATGATCGGCATTGATGATAAAATAATGGAACCAACGTCAAAAATTAGATTTGATCATTCAGATTCTGATGAAGACAACGAAGACAAGAATTCCAGTAAAATACAAGCAGTTGGAGCTTATAAAGTGCCTGAACAGTTAATTCAGAGATACTTGAAAGCACCCTGTGGATCACGGCTTGCTATACTTCTTTCAATTCTAAAGCATCTTTTTGAAAGGGAACCTTCACAGAAGGTTGTGCTATTCTTTTCAACATGTGATGCAGTGGACTTTCACTATTCTTTGTTAACCAAATTCCTTTTTTCATCAAATCCACAAACCGAAGAAGGGAACAGACCGATGTTTCTTGGATGTAAAACTCTTCGGCTACATGGTAATATGGAACAGGAAGATAGGACACGGAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCCCTTCTTTTGTCTACTGATGTTTCTGCCAGAGGCCTAGATTTTCCGAATGTTAGATGTATCATACAATATGATTCTCCGGGGGAAGCTACTGAATATGTGCATAGAGTTGGAAGAACTGCTCGAATGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAACCAAGTGAAATAGACTATTTACAAGACTTGGAGAAACATGGTGTCTCGCTAGTTGAGTATCCTCTCGTCAAAGTGTTGGATAGTTTCCCAATGTCTGCACACAAGAACAACATAAAGAAATCTGTTTTCATAGACTTGCATCCGTGGATCATGTGTCTCCAGAAGGCACTTGAGTCCTTCATCTCATCCAAGCCGAAGATGGAGGAACTTGCGAAGAGGGCATTTTGCTCTTGGGTTCGTGCATACACAGCGCATCGTGGAGATCTGAAAAGAATATTTATGGTTAAGAAACTTCACTTGGGACACGTAGCAAAAAGCTTTGCATTGAAACAACAGCCCTCATTAGTTGGAAAGTCATTCCAAAACCAAACTAAGAAGAGAAAGAGATTTGAAAAGAAAAATGGGTCGTCGAAAACGAGAAAAGTTGCACGGAGTGTGAAGTAA 1836 0.4003 MGTTKNTKTQVIKNKQNDKKTIADGTNKETKSDNNNVFASCSFSSLGLHPTLCDQLHERMGFEGPTLVQAQAIPVVLSGRHALVNAATGTGKTIAYLAPIIHHLQSYEKRIQRTDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTTSFLYTNLRWIIFDEADRILELGFGKEIQDILNLLGSTKTGHNDQANAVPSPSKFQRQNLLLSATLNEKVNHLAKISLEDPVMIGIDDKIMEPTSKIRFDHSDSDEDNEDKNSSKIQAVGAYKVPEQLIQRYLKAPCGSRLAILLSILKHLFEREPSQKVVLFFSTCDAVDFHYSLLTKFLFSSNPQTEEGNRPMFLGCKTLRLHGNMEQEDRTRSFQAFKTEKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARMGERGESLLFLQPSEIDYLQDLEKHGVSLVEYPLVKVLDSFPMSAHKNNIKKSVFIDLHPWIMCLQKALESFISSKPKMEELAKRAFCSWVRAYTAHRGDLKRIFMVKKLHLGHVAKSFALKQQPSLVGKSFQNQTKKRKRFEKKNGSSKTRKVARSVK* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4840 611 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 197 205 IPR000629 -
Tpr4g4840 611 MobiDBLite consensus disorder prediction 586 611 - -
Tpr4g4840 611 SMART DUF4217_3 516 581 IPR025313 -
Tpr4g4840 611 CDD DEADc_DDX31 52 270 - -
Tpr4g4840 611 Pfam Helicase conserved C-terminal domain 331 454 IPR001650 -
Tpr4g4840 611 Gene3D - 323 606 IPR027417 -
Tpr4g4840 611 SMART ultradead3 61 283 IPR014001 -
Tpr4g4840 611 Pfam Domain of unknown function (DUF4217) 518 578 IPR025313 -
Tpr4g4840 611 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 24 602 - -
Tpr4g4840 611 MobiDBLite consensus disorder prediction 12 27 - -
Tpr4g4840 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 475 IPR027417 -
Tpr4g4840 611 MobiDBLite consensus disorder prediction 582 611 - -
Tpr4g4840 611 Gene3D - 3 272 IPR027417 -
Tpr4g4840 611 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 70 IPR014014 GO:0003724
Tpr4g4840 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 501 IPR001650 -
Tpr4g4840 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 269 IPR014001 -
Tpr4g4840 611 SMART helicmild6 356 454 IPR001650 -
Tpr4g4840 611 CDD SF2_C_DEAD 313 463 - -
Tpr4g4840 611 PANTHER RNA HELICASE 24 602 - -
Tpr4g4840 611 Pfam DEAD/DEAH box helicase 67 257 IPR011545 GO:0003676|GO:0005524
Tpr4g4840 611 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4840 Tpr-Chr4 58300983 58308493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4840 42 485 Eukaryotic Initiation Factors Gene Family AT1G72730 25.280 9.34e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4840 K14806 - gmx:100805157 946.806