Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4838 ATGGAACTCAATCCCACGCTTCTTCAATTCCTTCTCCTCCTCTTTGCTGTTGCTGCTTTCACTTCCACTGCGACACTTAACGAGACTTGTGGTCACTTTGATGGTTCATTCAATAGAGACACTAAAGCACCATGCCCAAATGGTTGGGTTATGGACCCTAATAAGACCAAGTGTTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAGACATGTTGTAACAAATATGGCGGACATTTAGCATCATTGGCTTCGCTTCAGGAGCTACATTTTGCTCAAAGTCTATGTGGTGAATCCATAAATAGTTGCTGGATTGGTGGAAGAAGACTCAACAACACTATATCAGGTTTTCAGTGGACGTGGTCTGATAATTCTCAATGGAATAAGTCCATGTTTCCTTTGGCTAATGTTCCACTTAATTGTACTGGAACTGGACAATCCTGTGTTAGGAACATTACAGAGAATGTATGTTCCGTAATGACTAATAATTCAAAATCTCTCATCAGTGAGAGATGTGATAATCCTCACGCTTCTCTATGTATACTTGACATAGATGCGAAATGTAACCATATGCACTGCCACAGGGACTATCTAATCATCCTTGCTGTGGTGAGTGGATTGATACTCTCAACAACATTTGCAGTGGTTGTCTGGCTTCTTGTATATAAGAGGGGCAAGAAGAGAAGACGATCTAGAAAACTAACTGATCCTGCCGCTTCACTTCCATCATGGAAAGTCTTTACCAAAGAGGAACTAAGGTCAATTACGAAAAACTTTAGTGAAGGAAACCGTCTTGTTGGGGATGCCAAGACTGGCGGTACTTATAGTGGGGTCCAACCAGATGGCTCAAAGGTTGCTGTTAAGAGATTAAAGAGGTCAAGCTTTAAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTTGCAAGGCTTCGACATCCAAATCTGGTGGTTGTGATGGGCTGCTGTTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGTCCCTTAGATAAATGGCTACATCACATACCAAGGGGTGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCAACAACGCTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCGCAAGTTGTTCACCGAGATATACGAGCTAGTAATGTGCTGCTTGACGAGGAATTTGGAGCACACCTTATGGGTGTTGGCTTGTCCAAGTTTGTGCCATATGAAGCAATGCATGAGAGGACTGTGATGGCTGGTGGAACTTATGGATACCTTGCTCCGGAGTTCGTGTACAGAAACGAGCTTACAACAAAGAGTGATGTTTATAGTTTTGGTGTCTTACTACTTGAAATAGTTAGTGGACGTAGACCGGCACAAGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCTACACCTCTTGTTCAAGCTCATCGATACCCTGAACTGTTGGATCCTTATATATCTTCCTCGTCGACTAGTATCATCCCAGAGACTAGTTCTATCCAGAAGGTGGTTGACCTCGTTTATTCATGCACGCAGCATGTCCCTTCTATGCGCCCTAGAATGTCGCACGTTGTTCATCAGTTGCAACAGTTTGCCCAGCCACCTGTAAAATAA 1647 0.4329 MELNPTLLQFLLLLFAVAAFTSTATLNETCGHFDGSFNRDTKAPCPNGWVMDPNKTKCFLHVGRPQSWNDSETCCNKYGGHLASLASLQELHFAQSLCGESINSCWIGGRRLNNTISGFQWTWSDNSQWNKSMFPLANVPLNCTGTGQSCVRNITENVCSVMTNNSKSLISERCDNPHASLCILDIDAKCNHMHCHRDYLIILAVVSGLILSTTFAVVVWLLVYKRGKKRRRSRKLTDPAASLPSWKVFTKEELRSITKNFSEGNRLVGDAKTGGTYSGVQPDGSKVAVKRLKRSSFKRKKEFYSEIGRVARLRHPNLVVVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEAMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPELLDPYISSSSTSIIPETSSIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFAQPPVK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4838 548 Pfam Lectin C-type domain 65 182 IPR001304 -
Tpr4g4838 548 ProSiteProfiles C-type lectin domain profile. 54 183 IPR001304 -
Tpr4g4838 548 Gene3D Transferase(Phosphotransferase) domain 1 338 544 - -
Tpr4g4838 548 Gene3D - 33 185 IPR016186 -
Tpr4g4838 548 ProSitePatterns Tyrosine protein kinases specific active-site signature. 384 396 IPR008266 GO:0004672|GO:0006468
Tpr4g4838 548 Pfam Protein tyrosine and serine/threonine kinase 281 539 IPR001245 GO:0004672|GO:0006468
Tpr4g4838 548 CDD CLECT 57 182 - -
Tpr4g4838 548 SUPERFAMILY C-type lectin-like 34 183 IPR016187 -
Tpr4g4838 548 ProSiteProfiles Protein kinase domain profile. 262 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4838 548 SUPERFAMILY Protein kinase-like (PK-like) 236 539 IPR011009 -
Tpr4g4838 548 Gene3D Phosphorylase Kinase; domain 1 237 337 - -
Tpr4g4838 548 SMART CLECT_2 45 183 IPR001304 -
Tpr4g4838 548 PANTHER - 1 544 - -
Tpr4g4838 548 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 544 - -
Tpr4g4838 548 SMART tyrkin_6 261 539 IPR020635 GO:0004713|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4838 Tpr-Chr4 58289397 58295112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4838 75 545 Receptor kinase-like Gene Family AT1G52310 71.608 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Tpr4g4838 PK_Tyr_Ser-Thr 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4838 - - vra:106762676 928.317