Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4806 ATGAACGAGAAAGCCAACGTTTCAAAGGAGCTCAACGCTAAACACAAAAAGATATTGGAAGGACTTCTTAAATTACCGGAGAATAGAGAATGTGCTGATTGTAAAGCCAAAGGACCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATTTGCATGAATTGTTCAGGAATACATCGAAGTCTTGGTGTACATATTTCAAAGGTTCGTTCTGCTACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAGAGCAAATAGTTACTGGGAAGCAGAGTTACCTCCAAATTATGATAGAGTTGGTATTGAAAACTTCATCCGTGCCAAGTATGAAGACAAGAGATGGGCTGCAAGGGATGCTATACCAAAATCACCTTCAAGACTGCTAGAAGAGAAAAGTCCTTCACAATGGCAAAAGCCTGTGGAGAATACATTTGAGGAAAAGAAGAAAATCCAACCATCAAATGCAATTCCTGCTACTAGAATTAGTGTTCTTGCTCCTCCTAAAGGACATGTGCAGGTAACTCCAGTAGTGGCTAAACACCAGCATATTGAGAAAGTGGAACCTCTGGTGCCACAAGTACAAGCTGAAACATCACAGGAGACTGGCACATCTCATAACCCCCCTCCAAAAGTTGACTTTGCTACGGACCTTTTCGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCTGTCGTAGCTGATGCATCTGCTGACGATGATAACAACTGGGCAGGTTTTCAGTCTGCTGCAGAGACTTCAACAGCCGAGAAAACCGACACCAGGAAATCCGTTGAGAGTACACCCCAGCCCACCTCTGGAATTGAGGATCTATTTAACGACTCGTCTTCAGTGACACCAAGTTCTGCTCTTGAAAAACCACAAAAAGATGTAAAAAATGATATTATGAGCCTCTTTGAAAAGAACAATATAGTATCTCCATTTGCTATGCATCAGCAACAGTTGGCTATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCTGCTGCAGCTAAATCTTCTAGTGAGGATGCCAAATATCCTGCTAATGTACAGCAACCTGGTCTCAATATTCCTATCCAAAGTTGGCCAGCTGCGAGCTACCCAATTCCAGGAGTAATGCATGTGGGTAGTCAGGGAGACCTGCAGAAACTTATGCAGACAATGAACATGACTTCCGCGTATCCAGCAGAGAGTTCAGTTCAGTATCCACCATCTAGTTATTTTACCACGTCACAAGTTGCTCCAGTTAATGGCACAACGACAACGGCAGCAAGTAAACCTCAGTCAGCTACTCCGGTATCATCGAACACTACAAATACAGTGAATGATTATGATTTTTCCTCATTAACACAAGGAATGTTTGCGAAACCCTGA 1401 0.4304 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMNCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPPNYDRVGIENFIRAKYEDKRWAARDAIPKSPSRLLEEKSPSQWQKPVENTFEEKKKIQPSNAIPATRISVLAPPKGHVQVTPVVAKHQHIEKVEPLVPQVQAETSQETGTSHNPPPKVDFATDLFDMLSMDDPNEKGSVVADASADDDNNWAGFQSAAETSTAEKTDTRKSVESTPQPTSGIEDLFNDSSSVTPSSALEKPQKDVKNDIMSLFEKNNIVSPFAMHQQQLAMLAQQQSLLMAAAAAKSSSEDAKYPANVQQPGLNIPIQSWPAASYPIPGVMHVGSQGDLQKLMQTMNMTSAYPAESSVQYPPSSYFTTSQVAPVNGTTTTAASKPQSATPVSSNTTNTVNDYDFSSLTQGMFAKP* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4806 466 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 465 IPR044520 GO:0005096
Tpr4g4806 466 SMART arf_gap_3 16 129 IPR001164 GO:0005096
Tpr4g4806 466 MobiDBLite consensus disorder prediction 273 301 - -
Tpr4g4806 466 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 135 IPR001164 GO:0005096
Tpr4g4806 466 CDD ArfGap 19 117 - -
Tpr4g4806 466 MobiDBLite consensus disorder prediction 258 304 - -
Tpr4g4806 466 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Tpr4g4806 466 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Tpr4g4806 466 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Tpr4g4806 466 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Tpr4g4806 466 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Tpr4g4806 466 PANTHER ARF GTPASE ACTIVATOR 1 465 - -
Tpr4g4806 466 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4806 Tpr-Chr4 57426778 57435500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4806 16 118 C2H2 Transcription Factor Family AT4G05330 51.351 1.35e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4806 K12486 - gmx:100807561 664.07