Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4797 ATGACGGTAGCTGATTATGCCGTCAAGTTTGAGACGTTGTGCGCATTTAGTCCGCATTACAACACTTTTGAAGCGGAGGACGACAAGTGCGTGAAGTTTGAAAGTGGTCTACGTCCAGACATCAAGCATATGATCGGATTTTCACAGATAAGGGATTTTGCGACCCTTGTGAACAAGAGTAGGATCTGTGATGAAGATGGTAGGGCAAAGGTGAACTACTACAAGGCCGTGAACGACCGAAAAGGCAAAGGACAAGAACGCGGGAAACCTTATGATAACCGCGGTAGAGGTAATACAAGTGGTGGTAAGAAGCCGGTGAATGGAAGTTGTTATAACTGTGGAGGACGTGGTCATATGTCTTATGATTGCCCGAAGAGAGGGGATAGGTGTAAGAATTGTGGAAGGCTGGGCCACAAGACCGAAGCTTGCAGAGGAAAAGTGGTGTGTTTCAACTGTGGTGAGGAAGGCCACAAGAGTCCGACTTGTAAGAAGCCCAAGAAGGTGATGGGCAAGGTGTTTGCTTTGAGTGGAGAGGATGCTAGCCAAGAGGACAATCTCATTAGAGGTACGTGTTTCATCTATAACACTCCTTTAATTGCGATTATAGATACGGGAGTGACGCATTCTTTTATTTCTTTAGATTGTGTGAAGCGTTTGAGTGTTCCAGTAACGGATATGACGGGTGGGATGGAAATAGAAACTCCTGCTAATGGTTCAGTAATTACTCGACAAGTATGTCGTAATTGCCCCGTAACCATTTTTGATAGGCACTTTGGAATGGACTTAGTGTGTATTCCACTTAGTGGTATGGATGTAATTTTTGGTATGAATTGGTTAATCTTTAATCGAATTCATATCAACTGCTGTGAGAAGGCCGTTGTTTTTCCGAAACCAGAGGAGAATTTACAGTTGATGAGCGGGAAAGATGTGTCAGAATCATTGAATGAGCATGCCGAGATGTTCATGATGTTTGCATCATTGAAACTCGAAGGAGGAGTTAAAGTGGAAGAGTTACCAATCGTTTGTGAATTCCCAGATGTGTTTCCGGATGATATATCTGACGTGCCTCCAAAGCGAGAGGTAGAGTTTTCTATCGACCTAGTACCTGGAACTAGTCCGATATCGATGGCGCCGTATCGAATGTCAGCGTCAGAGTTGAATGAGTTGAAGAAGCAACTTGAAGAGCTGCTTGAGAAGAGGTTTGTTCGGCCGAGTGTTTCGCCATGGGGAGCACCTGTTTTGTTGGTAAAGAAGAAAGATGGAAGTTTGAAGTTTTCAGTGATCACAAGAGTCTGA 1296 0.4414 MTVADYAVKFETLCAFSPHYNTFEAEDDKCVKFESGLRPDIKHMIGFSQIRDFATLVNKSRICDEDGRAKVNYYKAVNDRKGKGQERGKPYDNRGRGNTSGGKKPVNGSCYNCGGRGHMSYDCPKRGDRCKNCGRLGHKTEACRGKVVCFNCGEEGHKSPTCKKPKKVMGKVFALSGEDASQEDNLIRGTCFIYNTPLIAIIDTGVTHSFISLDCVKRLSVPVTDMTGGMEIETPANGSVITRQVCRNCPVTIFDRHFGMDLVCIPLSGMDVIFGMNWLIFNRIHINCCEKAVVFPKPEENLQLMSGKDVSESLNEHAEMFMMFASLKLEGGVKVEELPIVCEFPDVFPDDISDVPPKREVEFSIDLVPGTSPISMAPYRMSASELNELKKQLEELLEKRFVRPSVSPWGAPVLLVKKKDGSLKFSVITRV* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4797 431 SUPERFAMILY Retrovirus zinc finger-like domains 144 172 IPR036875 GO:0003676|GO:0008270
Tpr4g4797 431 Coils Coil 379 399 - -
Tpr4g4797 431 MobiDBLite consensus disorder prediction 78 93 - -
Tpr4g4797 431 ProSiteProfiles Zinc finger CCHC-type profile. 110 125 IPR001878 GO:0003676|GO:0008270
Tpr4g4797 431 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 352 431 - -
Tpr4g4797 431 MobiDBLite consensus disorder prediction 78 100 - -
Tpr4g4797 431 SUPERFAMILY Acid proteases 186 286 IPR021109 -
Tpr4g4797 431 SUPERFAMILY Retrovirus zinc finger-like domains 106 146 IPR036875 GO:0003676|GO:0008270
Tpr4g4797 431 Gene3D Acid Proteases 174 311 IPR021109 -
Tpr4g4797 431 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Tpr4g4797 431 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Tpr4g4797 431 SMART c2hcfinal6 109 125 IPR001878 GO:0003676|GO:0008270
Tpr4g4797 431 PANTHER RNA-DIRECTED DNA POLYMERASE HOMOLOG 189 300 - -
Tpr4g4797 431 PANTHER RNA-DIRECTED DNA POLYMERASE HOMOLOG 341 424 - -
Tpr4g4797 431 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 341 424 - -
Tpr4g4797 431 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 189 300 - -
Tpr4g4797 431 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Tpr4g4797 431 Gene3D - 128 172 - -
Tpr4g4797 431 Pfam Retroviral aspartyl protease 168 300 - -
Tpr4g4797 431 Pfam Zinc knuckle 109 125 IPR001878 GO:0003676|GO:0008270
Tpr4g4797 431 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Tpr4g4797 431 CDD retropepsin_like 190 279 - -
Tpr4g4797 431 Gene3D - 100 127 - -
Tpr4g4797 431 ProSiteProfiles Zinc finger CCHC-type profile. 129 144 IPR001878 GO:0003676|GO:0008270
Tpr4g4797 431 SUPERFAMILY DNA/RNA polymerases 340 425 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4797 Tpr-Chr4 57251407 57253627 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4797 110 183 C2H2 Transcription Factor Family AT5G20220 34.783 3.06e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4797 - - cam:101511211 397.512