Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4761 ATGTCACTCTCCACCACAATTTCTCACCTCACCATTCTTCCTTCACTTCCTTCAACTTCATCACTTTCTCATAGATTTTCCTTCACTTTCCCTGAAAAAAGAAACCAGAAAAATTCTCATACAATTCTTTTCTCTTCTTCATCAAGGTCTGGTAGATTCTTGGTGAAGTCTCAGACTTCTAGTGTATCTTCTTCTGAGGCTGTGAAAGTAACTTCTGTTCCTTCTGAAATGAAGGCTTGGGTGTATGGAGAATATGGTGATGTTGATGTTTTGAAATTTGATTCCAGTGTTGCTGTTCCAGATGTTAAAGAAGATCAGGTTCTTGTTAAGGTTGTTGCTGCTGCTCTTAATCCTGTTGATGGTAAAAGAAGGCAGGGAAAATTTAAGGCTACTGATTCTCCTCTTCCGACTGTTCCTGGCTATGATGTTGCTGGGATTGTAGTAAAAGTTGGAAGTGGAGTAAAGGAATTCAAAGTGGGTGATGAAGTGTATGGTGATGTAAATGAGAAAGCACTTGAAGGGCCTAAACAGTTTGGGTCTCTAGCTGAATACACAGCTGTTGAGGAGAAATTATTGGCTCTAAAACCTAAGAATTTGGACTTTGCTCAAGCTGCTTCTCTTCCTCTTGCAATTGAGACTGCTTATGAAGGTTTGGAGAGGACTGGATTTTCTTCTGGTAAATCCATTCTTGTTCTTAATGGTTCTGGTGGGGTTGGAAGCTTAGTGATTCAGCTAGCTAAACAAGTTTTTGGAGCTTCAAGAGTAGCTGCCACTTCAAGCACTAGACATTTGGAGCTGTTGAAAAGCCTTGGAGCCGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGATTTACCTGAAAAATTTGATGTAGTTTATGATGCCATTGGGCAATGTGACAGAGCAGTGAAGGCTATAAAAGAAGGTGGCAGTGTAGTAGCACTAACAGGTGCTGTTACACCACCTGGATTCAGATTTGTAGTAACTTCCAATGGAGATGTTCTGAAGAAACTAAACCCTTATTTAGAGAGTGGAAATGTGAAGCCAATTATTGATCCCAAAGGTCCATTCAACTTTGCTCAAGTTGCTGAAGCATTCTCTTACATTGAAACAAACAAAGCTACTGGAAAAGTTGTTATATTCCCCATCCCATGA 1158 0.3998 MSLSTTISHLTILPSLPSTSSLSHRFSFTFPEKRNQKNSHTILFSSSSRSGRFLVKSQTSSVSSSEAVKVTSVPSEMKAWVYGEYGDVDVLKFDSSVAVPDVKEDQVLVKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGIVVKVGSGVKEFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLALKPKNLDFAQAASLPLAIETAYEGLERTGFSSGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRHLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGDVLKKLNPYLESGNVKPIIDPKGPFNFAQVAEAFSYIETNKATGKVVIFPIP* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4761 385 SUPERFAMILY GroES-like 74 231 IPR011032 -
Tpr4g4761 385 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 39 385 IPR044626 GO:0016628
Tpr4g4761 385 CDD MDR_like_2 77 381 - -
Tpr4g4761 385 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 39 385 - -
Tpr4g4761 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 199 320 IPR036291 -
Tpr4g4761 385 SMART PKS_ER_names_mod 86 381 IPR020843 GO:0016491
Tpr4g4761 385 Pfam Zinc-binding dehydrogenase 270 381 - -
Tpr4g4761 385 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 226 247 IPR002364 GO:0008270|GO:0016491
Tpr4g4761 385 Pfam Alcohol dehydrogenase GroES-like domain 105 167 IPR013154 -
Tpr4g4761 385 Gene3D - 218 332 - -
Tpr4g4761 385 Gene3D - 84 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4761 Tpr-Chr4 56127547 56130910 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4761 101 318 Monolignol Biosynthesis Gene Families AT4G39330 25.820 3.51e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4761 K18980 - gmx:100810816 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4761 4 56127547 56130910 Tpr4g4761 4 56127547 56130910 ECH