Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4756 ATGCTTTCACAGGAGGTGACAATGAGTAATATTGATGTTGTTCAACTGCTTAGACCCTTTGTTCAGACTAAAGCTTGGGATTATATTGTTGTTTGGAAATATGGAAATGACCCAACTAGGTTTATTGAGTGGATGGGTTGTTGCTGTTGTGGTGGAAACATGAATATCAAAGAGGAAATGGATGAAGAATACCATTTGGCTCCTATTTGTAGGGATTCCCTTTTTCATCATTCAGTTAGAACAAAGACTTGTGAGGCTATTGCCAACCTTCCTTATGCAATGTCTCTCTATTCTGGTGTCCATGCAGAGGTTGCAATATCCCAACAACCAAGATGGCTTATCCATGAGGACTCAACTGGAACCCAAGTTTTGATCCCTATTATTGGTGGTCTTGTTGAGCTTTTCACTGAAAAGCTGATCCCAAAAGATATATATATCATGGAGTTCATATCCGCACACTGTTTTGTCTCTATAAACCAAGAAGCCATATCTGCACAGAGCTACACCAACATGAACTTCAATGAGCATTGTTACACTTTAAATCCTGGTCTAGCTGGAGAAAACCATAGCAGCTCTAATCCTGGCATTGAAGGACCCTCCAATGGATCTAATCCTTCAACTGAGCACCTATCATTCGATTCAAACTTTGGTTGCTTGATTCCACATGAATATCTGAATCAACCAGTTAAAATATCTCCTGTACCAAAAGTTAAATGCCGCAGATACAATAATACTTCAGCGAAATGTCAGAGTAGTTTGAGTTTCCATAGTGGCAATGGAGAAGAAGATAAAGAAAAAATTTACAGGGGGGAGCCCAAAAAGGAAGTGTATCATGCTAAAAATCTCATCACAGAGAGAAATAGGAGGAAAAGAATCAAAACCGGGCTTTTTACTCTAAGGTCTCTAGTCCCTAATATAACCAAGATGGATAGAGCAGCAATTCTTGGGGATGCGATTGAATATATAAAGGAATTGCAGAGGCAAGAGATAGAACTTCAAGATGAGGTCAAGGCTTTAGAAGTTGAGGACTGTGAGAAGAACACACTACAATTTAGGGTGAAAAGAGACAACGAACAAGAAGAAGGAACCAAAAGTCTACCTCTCACTGCGATTAAGCAAAATTCTTCTGATTCCACTAGAAATACACAGATGAAGTTGCAAGTAGAAGTGAATCGTATTGGCAGAACAGATTTCATGATTAAGTTGTGCTGTGAGCATAAGCAAGGTGGGTTTTCAAGGTTGATGGAAGCTATAGATTCATTTGGACTCAATATGGTAAATGCAAACATGACCACATTTGATGGAAAAGTCCTGAACATTCTAATGGTTGAGGCAACTGCGCAGGATATTTCCGCAACAAAACTTAGAGAATATCTGATAAAGCATTTAACAAGTTGA 1398 0.3891 MLSQEVTMSNIDVVQLLRPFVQTKAWDYIVVWKYGNDPTRFIEWMGCCCCGGNMNIKEEMDEEYHLAPICRDSLFHHSVRTKTCEAIANLPYAMSLYSGVHAEVAISQQPRWLIHEDSTGTQVLIPIIGGLVELFTEKLIPKDIYIMEFISAHCFVSINQEAISAQSYTNMNFNEHCYTLNPGLAGENHSSSNPGIEGPSNGSNPSTEHLSFDSNFGCLIPHEYLNQPVKISPVPKVKCRRYNNTSAKCQSSLSFHSGNGEEDKEKIYRGEPKKEVYHAKNLITERNRRKRIKTGLFTLRSLVPNITKMDRAAILGDAIEYIKELQRQEIELQDEVKALEVEDCEKNTLQFRVKRDNEQEEGTKSLPLTAIKQNSSDSTRNTQMKLQVEVNRIGRTDFMIKLCCEHKQGGFSRLMEAIDSFGLNMVNANMTTFDGKVLNILMVEATAQDISATKLREYLIKHLTS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4756 465 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 15 151 IPR025610 -
Tpr4g4756 465 ProSiteProfiles ACT domain profile. 399 465 IPR002912 -
Tpr4g4756 465 Gene3D - 271 343 IPR036638 GO:0046983
Tpr4g4756 465 SUPERFAMILY ACT-like 398 459 IPR045865 -
Tpr4g4756 465 SMART finulus 282 331 IPR011598 GO:0046983
Tpr4g4756 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 325 IPR011598 GO:0046983
Tpr4g4756 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 341 IPR036638 GO:0046983
Tpr4g4756 465 CDD ACT_UUR-ACR-like 399 464 - -
Tpr4g4756 465 Pfam Helix-loop-helix DNA-binding domain 283 326 IPR011598 GO:0046983
Tpr4g4756 465 PANTHER TRANSCRIPTION FACTOR BHLH90 64 461 - -
Tpr4g4756 465 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 64 461 - -
Tpr4g4756 465 Coils Coil 322 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4756 Tpr-Chr4 56097213 56100674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4756 278 461 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 40.102 1.33e-32 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g4756 bHLH-MYC_N 8.7e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4756 - - mtr:MTR_8g064700 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4756 4 56097213 56100674 Tpr4g4756 4 56097213 56100674 ECH