Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4750 ATGGAAAAGTACGGCGATTTTGTTGATGTTGATTCGAATGACGTTCATTCCACTCATGGTGATACAGCTGATGTTGAATTGTATGATGATGATGATGATGACGAGGATGAAAGTTATTCCACTGGTGGTGAATCGCTGAATTACCAAAGTTCAGATGATAGCGATGATGCTGATAAATATGATGCTGATGCTGCTGATGATCCGGTTGAAGTAGATGCAGTTCAAGGTGATACATTGGTAAGAATCAATTCCATTACTTCTGATGAAATTCGTGCTTTGGAATTTGGTACTATCGACGCAGCATATGAATTTTATTATCAGTATGGTAAATGTAAAGGTTTTGCCATTAGGAAAAGTGATTCTAGGAAAAGAGGGCCTAAAGGTAATAGAATAACAGTAATGAGGCAGTTTGTATGCAGTAAACATGGTTTAAGAGATAAGAAACACTTATATAGGATAGACAGGAAAAGAGAGCATAGGCGTTTGACCCGTACTAATTGCCCTGCTAGGCTTCGTGTGCACTACAAAGCCGAAAAGGATAGATATGTAGTGTCAATGCTCGTAGAGGGTCATAACCATGAATTAAACCCATCTAGTTTAGTGCACTTGCACCCTGTTTATCGTAAAACTTCTGAAGCAGATAGAGCTCAGATTGATGGTATTCAGTCACATGGAATTAGGACTTGTCATATAATGGGGTACATGGTTGCTCAGAAGGGTGGATATGCTGGTGTTGGGTTAAAGAAAGATTTGTACAATTATTTTGATAAAAAAATGCGTGAAATAGTTAAAGATGGTGATGTTGAAGCTTCTCTCAATTATCTAAATGTAAAGTCGTCTACTGATCCCATGCTGTATGCTGAATATGCTGTCAACATCAGTGATGGACGAATGAAGTGTCTTTTTTGGGCAGATGGGAGCAGTAGATCTGACTATTTTTGTTTTGGCGATGTGGTTGCATTCGACACAACTTACAAGAAGAAGAAATACAACTACCCATTGATTATATTTTCTGGATTTAACCACCACTCTCAGACAATTATTTTTGGAGCTGCATTGGTAGCAGATGAAACAACAGAGACCTATAAGTGGGTCTTGAGGTGTTTTTTGGAGTGCATGGGAAATAAACACCCAAAAGCAGTGGTGACAGATGGAGATGGGGATATGAGGGAGGCAATAAAACAGGTTTTTCCCGATGCAACCCATAGGCTATGTGCTTGGCATTTGAGTAAGAATGCAACCGAAAATGTAAAGAATTCAGAATATTTGGAAGGTTTTAGAAAAGCCATATACTCAAATTTTACGAAGGATCAATTTGAAGAGTTTTGGGCAGAGCTGATTAAAGAAAATGAACTTGAAGGAAATCCTTGGGTTGCCAAAACTTATGAGAACAAATCACTGTGGGCAACTGCATATCTACGTGATAAGTTTTTTGGACGTTTAAGAACTAAGTCGCAATGTGAAGCTATTAATGCAATAATAAATTGTTATGTCAGGAATAAATGGTGCATTTTTGAATTTATGCACAATTTTGAGCAGGCTGTGACAGACTACAGGAACAATGAAGTGGTTGCTGATTTTAAATCAAAGTATACAGAACCTGTGTTGACAACTCACCTGCGTTTGATGGAGAGCGATGCCGCTAAAATTTATACAGCGGAGATTTTCAAAGAAGTTAAAGATGAAATTATGAAGGTTGGTGCATTGATTGTTAAGGATAAATATGAGCATGGGAAGACGAAGACTTATACATTGACAAAATATTGTAAGGATAACTATGAAAGAGAAGTTGTTTATGATGGTGATACATTGGAATGCTCGTGTAAGTTATTTGATTCGTGTGGCCTTCCATGTTCTCATATTTTTTATGTCATGAAGGAAGAACATGTTGATCACATTCCTAGGAGTTTGGTTTTGTCGCGCTGGACCAAGGATGCCAAAATCAAATATTTGAATTCGATGGATTGTAATGGTACAGTTGATTCGAATTTGATCGAGCTTGCTCGTTTTGGTGCATATTGTTCTGCTTTCACACATTTTTGCAAAGAAGCTTCAAAAAAGAATGGTGTTTATAGGGAAATAATGGAGGACATCATGAATTTACAAAAAAAGTATTGCAGTACAGCCGATCCTGTTGTGACACAAAAGTCAGCTGTAGGTGATCCCAAGACGGCGAAGAGTAAGGGTGCTTCAAAGAAAAACAAGAATGACACAAAAGTTGTCCGGCACCATTCAAAATGCAAAAGCACAACTCATAATGCGAGGAATTGTTCGGTTACAGAAAACATGCAAGATAAAGGGAATGTTGAGTCGGAGCCGGTGTCGATAGGTGATTCTTTAAGCCAAATTGAGAAGAACAAGAAAAGAAAAACAAGTTGCCATGGTGAAACAAGTGCGCAAAATAATTGTTCAGATCCACCGCAAAATCGTGGCGTCAATGTTACAACATCATATGTGGATATTACAAGCAGAGCAATCCCTCCAATGTATGGAATTCAACATGTGATGCCTGCGATGCATCCTGTAGGTCAATCGATGCAACTGCAAGTACAACCCATGTACCCAATTTATGGAATGCCCGTAGGTGAAAATTCAAATTCGGGTTTCGGTCAGCTGCAACAAGTGATGAAATCTGCTGGTCGTCATTAA 2649 0.3843 MEKYGDFVDVDSNDVHSTHGDTADVELYDDDDDDEDESYSTGGESLNYQSSDDSDDADKYDADAADDPVEVDAVQGDTLVRINSITSDEIRALEFGTIDAAYEFYYQYGKCKGFAIRKSDSRKRGPKGNRITVMRQFVCSKHGLRDKKHLYRIDRKREHRRLTRTNCPARLRVHYKAEKDRYVVSMLVEGHNHELNPSSLVHLHPVYRKTSEADRAQIDGIQSHGIRTCHIMGYMVAQKGGYAGVGLKKDLYNYFDKKMREIVKDGDVEASLNYLNVKSSTDPMLYAEYAVNISDGRMKCLFWADGSSRSDYFCFGDVVAFDTTYKKKKYNYPLIIFSGFNHHSQTIIFGAALVADETTETYKWVLRCFLECMGNKHPKAVVTDGDGDMREAIKQVFPDATHRLCAWHLSKNATENVKNSEYLEGFRKAIYSNFTKDQFEEFWAELIKENELEGNPWVAKTYENKSLWATAYLRDKFFGRLRTKSQCEAINAIINCYVRNKWCIFEFMHNFEQAVTDYRNNEVVADFKSKYTEPVLTTHLRLMESDAAKIYTAEIFKEVKDEIMKVGALIVKDKYEHGKTKTYTLTKYCKDNYEREVVYDGDTLECSCKLFDSCGLPCSHIFYVMKEEHVDHIPRSLVLSRWTKDAKIKYLNSMDCNGTVDSNLIELARFGAYCSAFTHFCKEASKKNGVYREIMEDIMNLQKKYCSTADPVVTQKSAVGDPKTAKSKGASKKNKNDTKVVRHHSKCKSTTHNARNCSVTENMQDKGNVESEPVSIGDSLSQIEKNKKRKTSCHGETSAQNNCSDPPQNRGVNVTTSYVDITSRAIPPMYGIQHVMPAMHPVGQSMQLQVQPMYPIYGMPVGENSNSGFGQLQQVMKSAGRH* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4750 882 MobiDBLite consensus disorder prediction 1 24 - -
Tpr4g4750 882 Pfam FAR1 DNA-binding domain 103 197 IPR004330 -
Tpr4g4750 882 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 83 767 IPR031052 GO:0006355
Tpr4g4750 882 SMART 26again6 604 631 IPR006564 GO:0008270
Tpr4g4750 882 MobiDBLite consensus disorder prediction 751 781 - -
Tpr4g4750 882 ProSiteProfiles Zinc finger SWIM-type profile. 593 629 IPR007527 GO:0008270
Tpr4g4750 882 MobiDBLite consensus disorder prediction 25 40 - -
Tpr4g4750 882 MobiDBLite consensus disorder prediction 1 59 - -
Tpr4g4750 882 MobiDBLite consensus disorder prediction 795 810 - -
Tpr4g4750 882 Pfam MULE transposase domain 318 412 IPR018289 -
Tpr4g4750 882 MobiDBLite consensus disorder prediction 717 810 - -
Tpr4g4750 882 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 83 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4750 Tpr-Chr4 56047117 56051860 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr4g4750 FAR1 1.4e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4750 - - ccaj:109792835 846.269