Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4743 ATGTTGCTTCTGTATATGCATCAGAGTCATGTAAGTTCTACAAACCAAGATGGAATAAGAAAAGATGGGTTTAGTTTTGCAAGAGTTGGGTGTGATGATAGAGCATTAGGAATGAGTTGGAACCTTGCTAGTTCTATGATGAAGAGGGATGCTATTTTGCCAAATGGACATGGGATGTTTCCTCAAAGTTTGTCTCAGTTTCCAACTGATTCTGGATTTATTGATGCTGCAAGAATGTCGTGCTTTAGTGCCGGGGGTTTCAGTGATATGGTTAACTCATGTGGGATTCCTCAATCTATGCCTTTACACGTGTCTCGGTCTGTTGAGCATCATGGTAGTGATGGAAGTCCACTCCAAAATGATGGAAGAAGTGATTGTCCTGTAATGTCTCCAGATGAAGGGAAACAAGCTCATGGAGGGTGTTCTAATGAGGTGGATAGAGCTGAATCAAGTGGTGATGATGGTGTTGGTAATGGTAGCCATGATGATTCCCAAATGTTGGATTCTACAAGTGGTGAACCTTCTATTAAAGGTTTAAAGTCAAAGAAAAGGAAAAGAAGTAGGCAGGATGGTGATAGTAGTGATAAAGCCACTAGAACTCTTGAGCTTCCAACAGCAACAGCAAAAGACAATTGTGAGAGTAGAAAGGGAAAGCAGCTAACAACTTCAACAGCCAAGGCTTCTGGGAAGAATGCCAAACAGGGGTCTCAAGCTTCTGATCTGCCTAATGAGGGATACGTACATGTCAGGGCTCGCCGTGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTGAGGAGAGAAAAGATCAGTGAAAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAACAAGGTCACTGGCAAGGCTGTGATGCTAGATGAAATCATTAATTATGTGCAGTCTCTTCAACAACAAGTTGAGTTTTTATCGATGAAACTTGCAACAGTTAATCCACATGTGGAGTTTAATATGGAACGGCTTCTCCATAAAGATATTCTTCAACATCGGCCGGGTCCGTCATCTACTTTGGGGTTTCTCACAGAAATGCCAATGGCTTTTCCTCCATTATTACATCCATCTCAACAGGGACTCATTTGTGCGACTCTACCTAACATGGCAAATTCATCACATTTACTCGGTCATACCGTGCAACCACAGTCAGCACCTTTGACCGGAGAATTCAAAGAGCCAAATCAGGTTAATCCATTGCAAGCAGCCAAGCCCTGA 1236 0.4264 MLLLYMHQSHVSSTNQDGIRKDGFSFARVGCDDRALGMSWNLASSMMKRDAILPNGHGMFPQSLSQFPTDSGFIDAARMSCFSAGGFSDMVNSCGIPQSMPLHVSRSVEHHGSDGSPLQNDGRSDCPVMSPDEGKQAHGGCSNEVDRAESSGDDGVGNGSHDDSQMLDSTSGEPSIKGLKSKKRKRSRQDGDSSDKATRTLELPTATAKDNCESRKGKQLTTSTAKASGKNAKQGSQASDLPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPHVEFNMERLLHKDILQHRPGPSSTLGFLTEMPMAFPPLLHPSQQGLICATLPNMANSSHLLGHTVQPQSAPLTGEFKEPNQVNPLQAAKP* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4743 411 PANTHER BHLH TRANSCRIPTION FACTOR 110 405 - -
Tpr4g4743 411 PANTHER BHLH TRANSCRIPTION FACTOR 12 105 - -
Tpr4g4743 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 253 324 IPR036638 GO:0046983
Tpr4g4743 411 CDD bHLH_AtBPE_like 245 330 - -
Tpr4g4743 411 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 110 405 IPR024097 GO:0006355
Tpr4g4743 411 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 12 105 IPR024097 GO:0006355
Tpr4g4743 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 305 IPR011598 GO:0046983
Tpr4g4743 411 SMART finulus 261 311 IPR011598 GO:0046983
Tpr4g4743 411 Gene3D - 252 326 IPR036638 GO:0046983
Tpr4g4743 411 MobiDBLite consensus disorder prediction 162 176 - -
Tpr4g4743 411 MobiDBLite consensus disorder prediction 106 243 - -
Tpr4g4743 411 MobiDBLite consensus disorder prediction 217 241 - -
Tpr4g4743 411 Pfam Helix-loop-helix DNA-binding domain 258 306 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4743 Tpr-Chr4 55922726 55928758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4743 30 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 46.859 9.76e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g4743 HLH 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4743 - - mtr:MTR_8g065740 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4743 4 55922726 55928758 Tpr4g4743 4 55922726 55928758 ECH