Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4709 ATGTCAAGAAGAGGTTCAAGGGGGAAAAGGGTTCCATTGCTGAAGCTTTTCTCATTTGCTGACTTCTATGATTATGTCTTGATGGCCGTTGGATCAATTGGGGCATGTATTCATGGTGCATCTGTGCCTGTTTTCTTTATCTTCTTTGGAAAAATTATTAATGTCATAGGTTTGGCTTACCTTTATCCTAAAGAAGCTTCTCACCAAGTTGCCAAGTATGCGTTGGATTTTCTATATCTAAGTATAGTAATATTGTTTTCATCATGGGCAGAGGTAGCTTGTTGGATGCATACCGGGGAACGTCAAGTAGCAAAGATGAGGATGGCATATTTAAGCTCAATGTTGAATCAAGATATAAGTCTTTTTGATGCTGAGTCATCAACTGGAGATGTTATTTCTTCTATTACAACTGACATCATTGTTGTTCAAGAAGCATTATCTGAGAAGGTTGGGAACTTTATGCACTTTGTAAGCCGATTTATAGCGGGCTTTATCATCGGCTTTTTCAGAGTTTGGCAGATCAGTATAGTGACACTTGCTGTTGTTCCTTTGATTGCTATTGCTGGAGGTCTTTATGCATATGTGACATTTGGGCTTATTGCAAAAGTTCGTAAATCATATCTAAGGGCAGGTGAAATCACTCAGGAGGTGATAGGAAATGTCAGAACCGTACAAGCATTTGGAGGAGAACAAAGAGCGGTGATATCATACAAAGTGGCTCTGAGGAACACATATAAGAATGGTCGAAAAGCAGGTTTAGCAAAGGGTCTAGGACTAGGCTCTATGCATTGTGTCCTTTTTCTATCATGGGCTCTGCTTGTTTGGTTTACCAGCATTATTGTTCACAAGGGCATCGCCAACGGTGGAGTGGCTTTCACTACCATGCTCAATGTGGTTATCTCTGGCCTGTCACTTGGGCAGGCAACACCCGACATTTCTGCATTTATCAGAGCAAAGACAGCAGCTTATCCCATTTTCGAGATGATAGAGAGAGACACAGTTAGCAAAAATAGCTCAAAAAATTGTCGAAAATTAAAAAAAATAGATGGTCACATACAATTTATTAATGTCTGTTTCAATTACCCATCTCGCCCTGATGTTGCTATTTTCAACAATCTTTGTCTTGAGATTCCTTCAGGTAAAGTTTTGGCACTTGTAGGAGGGAGTGGTTCAGGAAAAAGTACAATTATATCGTTAATTGAGCGTTTCTATGAACCAATTTCTGGTCAAATTCTGTTAGATAGGAATGATATAAAAGAACTTGATCTTAAATGGCTTAGACATCAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTTGCTACAAGCATAAGGGAGAACATATTGTATGGTAAAAATGATGCCACTCCTGAAGAACTAAGCCGTGCTTTGGAACTTTCTAATGCTCACTCTTTCATCAACAATCTTCCTGATGGATTAGATACTCAGGTTGGTGAGAGAGGAATACAATTATCAGGGGGACAAAAGCAGAGAATTGCAATATCTCGTGCGATAGTTAAAAATCCATCAATCCTTTTATTAGATGAAGCAACTAGTGCTCTAGATGCAGAATCTGAGAAAAGTGTACAAGAAGCTCTTGATCGTGTCATGATTGGTAGAACAACTGTGATAGTAGCACACAGACTTTCAACCATTAGAAATGCAGATATGATAGCTGTTGTTGAACGAGGGAGCATTGTGGAAACTGGAAATCATGAAGAGCTCATTTCCAACTCAAATAGTGTATATGTATCTCTTGTTCAAGGCCACCCTTCTCCGGATCCTAGCTTGGGACAGTCATCAAGCATAAAGAACTCGGTAGAAACATCCCATACATCAATTATTGGTGGTAGTTTTCGTTCAGATACTACTAGCAATGCATGTGCTGATGAAGCAGGAAGTGTTGAAAAGCCGAGGCATGTTTCATTAATAAGATTATATTCAATGATTGGTCCTTATTGGTCTTATGGAGTTTTTGGAACCTTGGCTGCTTTTACAACTGGTGCTCTTATGCCACTCTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATATTATATGGATTGGGATAGCACACAACATGAAGTGAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCAATTGTAGCTATCACGGCCTATACCATTGAACATCTTTCTTTTGGAATCATGGGGGAACGACTTACCCTTCGTGTCAGGGAAATTATGATTTCTGCTATTTTGAAGAATGAAATCGGTTGGTTTGATGATACGAGAAACACAAGTACTATGCTTTCATCACGTTTAGAGACAGATGCAACTTTGTTAAAAACTATAGTGGTGGACCGTTCTACAATTCTATTGCAGAATGTTGGCCTAGTTGTTACTTCATTTATTATTGCATTCTTTTTGAACTGGAGGATAACACTTGTTGTCTTGGCAACATATCCTTTGATAATTAGTGGTCACATTGGTGAGAAACTTTTCATGCAAGGATTTGGTGGCAACCTAAGCAAAGCATATCTAAAAGCAAACATGTTAGCTGGGGAGGCTGTTAGTAATATAAGGACTGTGGCTGCATTTTGTGCAGAAGAAAAGATTATTGGTCTTTATGCTCATGAGCTTGTTGAGCCATCCAAACGTTCATTCAGACGAGGCCAAATTGCTGGCATATTTTATGGCATTTCCCAGTTCTTTATTTTCTCATCTTATGGCATAGCCTTGTGGTATGGATCTTTATTGGTTCAAAAGGATCTTTCTACCTTTAAATCAATCATGAAGTCATTTATGGTTTTAATCGTAACAGCATTGGCTATGGGGGAAACTTTGGCACTTGCACCAGACCTTTTGAAAGGGAATCAAATGGTTTCATCAATTTTTGATATGATAGATAGAAAGTCAGGAATAATGTATAATGTTGGAGAAGAGTTGACGACAGTGGAAGGAACAATTGAGCTAAGAAAGATCAATTTTAGCTACCCTTCAAGACCAAACATTGTTATTTTTAATGATTTCAATCTAATAGTTCCTTCAAGGAAGAGTCTTGCCTTGGTGGGGCACAGTGGTTCTGGTAAAAGCTCAATAATCTCACTTATACTTAGATTTTATGATCCAACATCTGGGAAGGTTATGATTGATGGAAAAGATATCAAGAAAATGGATTTGAAATCCCTAAGGAAGCATATTGGTCTAGTACAACAAGAACCAGCACTATTTGCAACATCAATTTATAAAAACATTCTTTATGGCAAAGAAGAAGCATCAGAATCAGAAGTGATTGAAGCAGCTAAACTAGCCAATGCTCATAACTTCATAAGTGCACTTCCTGATGGCTACAAAACCAAAGCAGGTGAGAGAGGAGTACAACTATCTGGTGGCCAAAAACAAAGGGTAGCCATTGCAAGGGCTGTTTTAAGAAACCCGAAAATATTACTTCTGGATGAAGCAACAAGTGCACTCGATGTAGAGTCGGAACGCGTTGTACAACAAGCTTTAGACAAGTTGATGCAAAATAGAACAACAATTATTGTGGCACATAGGCTAACTACAATAAGAAATGCAGATCAAATATCAGTTTTGCAGGATGGAAAGATTATTGAGCAAGGTACTCATTCAAGTCTTATGGAAAATATAGAGGGAGCTTATTTCAAATTAGCCAGCTTACAACAACAACCACATGTACATAATACATGA 3672 0.3834 MSRRGSRGKRVPLLKLFSFADFYDYVLMAVGSIGACIHGASVPVFFIFFGKIINVIGLAYLYPKEASHQVAKYALDFLYLSIVILFSSWAEVACWMHTGERQVAKMRMAYLSSMLNQDISLFDAESSTGDVISSITTDIIVVQEALSEKVGNFMHFVSRFIAGFIIGFFRVWQISIVTLAVVPLIAIAGGLYAYVTFGLIAKVRKSYLRAGEITQEVIGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIIVHKGIANGGVAFTTMLNVVISGLSLGQATPDISAFIRAKTAAYPIFEMIERDTVSKNSSKNCRKLKKIDGHIQFINVCFNYPSRPDVAIFNNLCLEIPSGKVLALVGGSGSGKSTIISLIERFYEPISGQILLDRNDIKELDLKWLRHQIGLVNQEPALFATSIRENILYGKNDATPEELSRALELSNAHSFINNLPDGLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMIGRTTVIVAHRLSTIRNADMIAVVERGSIVETGNHEELISNSNSVYVSLVQGHPSPDPSLGQSSSIKNSVETSHTSIIGGSFRSDTTSNACADEAGSVEKPRHVSLIRLYSMIGPYWSYGVFGTLAAFTTGALMPLFALGISHALVSYYMDWDSTQHEVKKIAFLFCGAAIVAITAYTIEHLSFGIMGERLTLRVREIMISAILKNEIGWFDDTRNTSTMLSSRLETDATLLKTIVVDRSTILLQNVGLVVTSFIIAFFLNWRITLVVLATYPLIISGHIGEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFCAEEKIIGLYAHELVEPSKRSFRRGQIAGIFYGISQFFIFSSYGIALWYGSLLVQKDLSTFKSIMKSFMVLIVTALAMGETLALAPDLLKGNQMVSSIFDMIDRKSGIMYNVGEELTTVEGTIELRKINFSYPSRPNIVIFNDFNLIVPSRKSLALVGHSGSGKSSIISLILRFYDPTSGKVMIDGKDIKKMDLKSLRKHIGLVQQEPALFATSIYKNILYGKEEASESEVIEAAKLANAHNFISALPDGYKTKAGERGVQLSGGQKQRVAIARAVLRNPKILLLDEATSALDVESERVVQQALDKLMQNRTTIIVAHRLTTIRNADQISVLQDGKIIEQGTHSSLMENIEGAYFKLASLQQQPHVHNT* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4709 1223 Pfam ABC transporter 996 1144 IPR003439 GO:0005524
Tpr4g4709 1223 Pfam ABC transporter 371 519 IPR003439 GO:0005524
Tpr4g4709 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1215 IPR027417 -
Tpr4g4709 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 587 IPR027417 -
Tpr4g4709 1223 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 29 317 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g4709 1223 SUPERFAMILY ABC transporter transmembrane region 16 322 IPR036640 GO:0005524|GO:0016021
Tpr4g4709 1223 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 977 1213 IPR003439 GO:0005524
Tpr4g4709 1223 Gene3D ABC transporter type 1, transmembrane domain 15 946 IPR036640 GO:0005524|GO:0016021
Tpr4g4709 1223 Pfam ABC transporter transmembrane region 659 930 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g4709 1223 Pfam ABC transporter transmembrane region 33 301 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g4709 1223 ProSitePatterns ABC transporters family signature. 491 505 IPR017871 GO:0005524
Tpr4g4709 1223 Gene3D - 967 1222 IPR027417 -
Tpr4g4709 1223 CDD ABC_6TM_Pgp_ABCB1_D1_like 28 325 - -
Tpr4g4709 1223 SMART AAA_5 379 571 IPR003593 -
Tpr4g4709 1223 SMART AAA_5 1004 1196 IPR003593 -
Tpr4g4709 1223 Gene3D - 342 605 IPR027417 -
Tpr4g4709 1223 CDD ABC_MTABC3_MDL1_MDL2 352 588 - -
Tpr4g4709 1223 CDD ABC_MTABC3_MDL1_MDL2 977 1215 - -
Tpr4g4709 1223 CDD ABC_6TM_Pgp_ABCB1_D2_like 647 962 - -
Tpr4g4709 1223 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 352 588 IPR003439 GO:0005524
Tpr4g4709 1223 SUPERFAMILY ABC transporter transmembrane region 639 958 IPR036640 GO:0005524|GO:0016021
Tpr4g4709 1223 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 8 1218 - -
Tpr4g4709 1223 ProSitePatterns ABC transporters family signature. 1116 1130 IPR017871 GO:0005524
Tpr4g4709 1223 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 658 944 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr4g4709 1223 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 8 1218 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4709 Tpr-Chr4 55493623 55506596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4709 11 1221 Calmodulin-binding Proteins AT2G36910 50.040 0.0 1201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4709 K05658 - gmx:100819045 1922.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4709 4 55493623 55506596 Tpr4g4709 4 55493623 55506596 ECH