Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4706 ATGGATTACAACCGAGACGGCAACGTCGTTCAAATCATCACCTCCGGCGGCGGTGGAGGTGGTGCCGATAGCTGGTCAACCGACCAAGCCGATTGGGCAACGGAAGATGAATATCGTTACTGGAACGGAAATGAAGCCGGCGAAACCACGCCATCTTCAAACTCGAATTCCGAGATACAACAACGGTCAGGAAGCGAGCCGCCGAGTAAGAAATCAAGAAGCAATTCACAAGATGGCGGATCGAATCGAGCGAAAGCAATCGGGAAAATGTTCTTTAAGACGAAACTGTGTTGCAAGTTTCGTGTGGGGACTTGTCCTTATATAACAAACTGTAATTTTGCTCATAGTGTTGAGGAGCTTCGGCGGCCGCCGGCAAATTGGCAGGAGATTGTTGCTGCTCATGAGGAAGAGAGAAATGTGCTTGAGCAGCCGAGGGAAGAGTTTCAGATTCCGACAGTTGGTTCGAGTACTTTTGTTGGGGAGAGTATGAATAATAGGTCTTATAAGGGTAGACATTGTAAGAAATTTTATACTGAAGAAGGTTGTCCTTATGGTGATAGTTGCACTTTTCTTCATGATGAACAATCAAAGAATCGCGAAAGTGTTGCTATAAGTTTAGGTCCTGGTGGTTATGGTGGTGGTGGAGGTGGTAGTATTGGTAGTGGTGGTGGTGGTGGTGGTGTTAGTAGTAGTGGCGTTGTTGTTGTTGCAGCTGGTGCAGCGGCCGCTGGAAATGGACCTAATTTGAAGCCTTCGAATTGGAAAACTAGGATTTGTAATAAGTGGGAGATGACAGGGTATTGTCCCTTTGGCAACAAATGTCATTTTGCTCATGGTGCTACAGAATTACACAGATATGGAGGTGGGCTTATGGAAGGAGAAAGCAGAGACACTGCTTCTGGTGTTGCGTCCGACACAAAACAGGGGGTTTTATCAAAAAATCATGCTGATAATGTGGTTGCATCAACTCCTGTTGCTCAATCAGATGTTTATCATATTGGAGTCCCTTCACAGAGGCCTTCCATTGTGAGCCAGAGGCCAGGACAGAGAGCTCATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATCGATGACTTCGAATAG 1122 0.4599 MDYNRDGNVVQIITSGGGGGGADSWSTDQADWATEDEYRYWNGNEAGETTPSSNSNSEIQQRSGSEPPSKKSRSNSQDGGSNRAKAIGKMFFKTKLCCKFRVGTCPYITNCNFAHSVEELRRPPANWQEIVAAHEEERNVLEQPREEFQIPTVGSSTFVGESMNNRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLGPGGYGGGGGGSIGSGGGGGGVSSSGVVVVAAGAAAAGNGPNLKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASGVASDTKQGVLSKNHADNVVASTPVAQSDVYHIGVPSQRPSIVSQRPGQRAHQKWKGPDKISRIYGDWIDDFE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4706 373 ProSiteProfiles Zinc finger C3H1-type profile. 91 118 IPR000571 GO:0046872
Tpr4g4706 373 MobiDBLite consensus disorder prediction 45 82 - -
Tpr4g4706 373 Gene3D - 88 122 - -
Tpr4g4706 373 Gene3D - 248 285 - -
Tpr4g4706 373 MobiDBLite consensus disorder prediction 36 82 - -
Tpr4g4706 373 SUPERFAMILY CCCH zinc finger 89 122 IPR036855 GO:0046872
Tpr4g4706 373 SMART c3hfinal6 253 280 IPR000571 GO:0046872
Tpr4g4706 373 SMART c3hfinal6 167 194 IPR000571 GO:0046872
Tpr4g4706 373 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Tpr4g4706 373 Pfam CCCH-type zinc finger 171 193 IPR041367 -
Tpr4g4706 373 ProSiteProfiles Zinc finger C3H1-type profile. 167 195 IPR000571 GO:0046872
Tpr4g4706 373 SUPERFAMILY CCCH zinc finger 164 195 IPR036855 GO:0046872
Tpr4g4706 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 254 279 IPR000571 GO:0046872
Tpr4g4706 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Tpr4g4706 373 Gene3D - 159 206 - -
Tpr4g4706 373 ProSiteProfiles Zinc finger C3H1-type profile. 253 281 IPR000571 GO:0046872
Tpr4g4706 373 SUPERFAMILY CCCH zinc finger 250 284 IPR036855 GO:0046872
Tpr4g4706 373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 237 370 - -
Tpr4g4706 373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 16 209 - -
Tpr4g4706 373 PANTHER CCCH ZINC FINGER/TIS11-RELATED 16 209 IPR045877 GO:0003729
Tpr4g4706 373 PANTHER CCCH ZINC FINGER/TIS11-RELATED 237 370 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4706 Tpr-Chr4 55478080 55480949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4706 217 283 C3H Transcription Factor Family AT1G68200 36.620 1.92e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr4g4706 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4706 - - gmx:100788208 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4706 4 55478080 55480949 Tpr4g4706 4 55478080 55480949 ECH