Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4704 ATGAAGATTGAAGATTCTTCTTGTAATACAATGGCTTTGGAAACACTTTCATCATGTAATGAGTTTTCAAATTTCATTATCTATGACACAATTTCTGCAACTCCATTTAGTAGTAATACTAATACTACAGAGTACTCTGGTTTCTTGGAAAACACAATGAACAACAACTATGAGGAAAATATTCATCATGAGGCTACAATATTTGATCATAGTAACTTTTCTATGATGAATAACAGAAAAAGGCAATTAATGGAACAAGAAGAAACAATGAAGGAGATGAATAATAATAATAGTAATAATCAAGTGGTGCAGAGGAAGAAGAGGAGAAGAAAACCAAGAGTTTGTAAGAACAAAGAAGAAGCTGAAACACAAAGAATCACACACATTACTGTTGAGAGAAATCGTAGAAAGCAAATGAATGAACATCTTGCTGTACTTCGTTCTCTCATGCCTGAATCTTATGTTCAAAGGGGTGACCAAGCTTCAATAGTAGGAGGTGCCATAGAGTTTGTAAAAGAGCTAGAACATCTCTTACAATCACTTGAAGCTAGAAAGCTACAACAATTACAACAAGAATTAGCACAACAACAAAGCAATAATATTGAAGATACATCCAATAGTGTTGTTTCAAAACAAATAATGAAACCACCTTTTGCACAATTTTTTGTGTATCCTCAATATACATGGTCCCAAACACCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACATTAATCGAGACTCATGCAAACCTTAGAATTCTCACTAGGACAAGACCTGGACAATTAACTAAATTAGTTGCTGGTTTTCAATCACTCTTCTTCACAATTCTACATCTCAATGTCACTACTCTACAACCTTTGGTATTCTACTCTATCAGTGCCAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGATGGCATTGCAACAGCAGTTCATCATTTACTTGGAAGAATTGAGGAAGAAACTTCCCTAATTTGCTGTTAA 1008 0.3462 MKIEDSSCNTMALETLSSCNEFSNFIIYDTISATPFSSNTNTTEYSGFLENTMNNNYEENIHHEATIFDHSNFSMMNNRKRQLMEQEETMKEMNNNNSNNQVVQRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQQLQQELAQQQSNNIEDTSNSVVSKQIMKPPFAQFFVYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRTRPGQLTKLVAGFQSLFFTILHLNVTTLQPLVFYSISAKVEEGFQLGSVDGIATAVHHLLGRIEEETSLICC* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4704 335 CDD bHLH_AtFAMA_like 126 185 - -
Tpr4g4704 335 Gene3D - 122 205 IPR036638 GO:0046983
Tpr4g4704 335 PANTHER TRANSCRIPTION FACTOR BHLH71 11 332 - -
Tpr4g4704 335 Coils Coil 171 206 - -
Tpr4g4704 335 Coils Coil 76 96 - -
Tpr4g4704 335 Pfam Helix-loop-helix DNA-binding domain 124 175 IPR011598 GO:0046983
Tpr4g4704 335 PANTHER MAX DIMERIZATION, MAD 11 332 - -
Tpr4g4704 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 174 IPR011598 GO:0046983
Tpr4g4704 335 MobiDBLite consensus disorder prediction 95 121 - -
Tpr4g4704 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 191 IPR036638 GO:0046983
Tpr4g4704 335 SMART finulus 129 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4704 Tpr-Chr4 55462392 55465783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4704 115 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 54.737 2.80e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g4704 HLH 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4704 - - pvu:PHAVU_003G284500g 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4704 4 55462392 55465783 Tpr4g4704 4 55462392 55465783 ECH