Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4703 ATGGCTCGTCCCGATTATCCGACAACATGGATTCCTTACATAAATAGCAAAGATTGTTCTCAAGGATTTTGTAGCATGTATTGTCCACAATGGTGCTACATAGTTTATGCTCCTCCACCACCACCAACTTTTCAATACCCTGATGATGATTCAAAACCATATTTTTCTCCTCTTGTTATTGCAATCATGGGAATTTTAGCCACAGCTTTCTTACTAATCACTTACTACACTCTAATAACCAAATACTGTGGTCATAGAGAATCTTCACAAAGAAACAGCACTGACCAAGTTGATGAAATCCAACAAAATCGCCGCGAAAATTGTCAAGTTTCAACCTTTGGTTTAGATGATGCTCAAATAAAATCCATTGCAGTTTTTAAGTACAAAAAAGGCGACACTTTTTTCGCTGGTACTGTCACTGATTGTTCTGTTTGTTTAAGTGAATTTCAAGATGATGAAAGTGTTAGACTTTTACCAATGTGTAACCATGTTTTTCATCTTCCTTGTATCGATACGTGGCTTAAATCCAACTCTTCGTGTCCTCTATGTCGTTCGAACATACTCACTTTGAATGCTTCAACACTTCAAGCTCCAATTCCAGCTACAGTTATAGAACTTCCTTCAAGAAATGAAATTTTATTAGAAAGTGAACAAATACTTGTGGAAGAAGCAACGATTCATCATGATAGAGTTGATTCGAAGATACCTTCATTACGCGCTTATAGTGATTTATGTAATTTACAAGGAAGAGAAAGAATAATTGAAATTAGAGATGAAGTTTGTGAATCCATTGGAAGATCAGTTTCTATGGATCATTCATTTCAAAATGGTTTTTCAATAAGTGATGTGTTGAATATGAATGAAGATGAAGATTCTGATGAAGAAGGTTGTTCAATGGATGCTTGTTCATCAAAGAGATTACAAGGACAAAGTAGTAATTATAAGTCAAGGTACAAAAAAAGGATGTTGCATTGTGTTATGAGTCCAATTGCAATGAAGAGATCATTTTCTAATGGTAGATTTTCACTTAGTAAAATTGATAGAGGAAAAAGGCAGGGAATTTTGCCTGTTTGA 1074 0.3473 MARPDYPTTWIPYINSKDCSQGFCSMYCPQWCYIVYAPPPPPTFQYPDDDSKPYFSPLVIAIMGILATAFLLITYYTLITKYCGHRESSQRNSTDQVDEIQQNRRENCQVSTFGLDDAQIKSIAVFKYKKGDTFFAGTVTDCSVCLSEFQDDESVRLLPMCNHVFHLPCIDTWLKSNSSCPLCRSNILTLNASTLQAPIPATVIELPSRNEILLESEQILVEEATIHHDRVDSKIPSLRAYSDLCNLQGRERIIEIRDEVCESIGRSVSMDHSFQNGFSISDVLNMNEDEDSDEEGCSMDACSSKRLQGQSSNYKSRYKKRMLHCVMSPIAMKRSFSNGRFSLSKIDRGKRQGILPV* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4703 357 SUPERFAMILY RING/U-box 141 190 - -
Tpr4g4703 357 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 1 347 - -
Tpr4g4703 357 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 347 IPR044675 -
Tpr4g4703 357 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Tpr4g4703 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 191 IPR013083 -
Tpr4g4703 357 CDD RING-H2_PA-TM-RING 141 184 - -
Tpr4g4703 357 Pfam Ring finger domain 141 184 IPR001841 -
Tpr4g4703 357 SMART ring_2 142 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4703 Tpr-Chr4 55452043 55453833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4703 7 350 C3H Transcription Factor Family AT5G17600 38.356 3.59e-61 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4703 - - vun:114176645 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1488 2 17537792 17539817 Tpr4g4703 4 55452043 55453833 PCT