Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4696 ATGGCTTCCGATGGCTTCACCGATAAGAATCTTGTTTTCAGAAAACTCAAGATGAAGTCAGAGAATAAGATGTGTTTTGATTGTAATACGAAGAATCCAACATGGGCTTCTGTTACGTATGGGATCTTTCTGTGCATTGATTGCTCTGCTGTTCATCGAAGTCTTGGTGTTCATGTTAGCTTCGTGAGATCTACAAACTTAGACTCATGGAGTCCTGAGCAACTAAAAATAATGAGTTTTGGAGGAAACAGTCGTGCACAGATTTTCTTTAAGCAACATGGTTGGACCGACGGTGGTAAAATAGAAGCAAAGTATACATCCAGAGCTGCAGAGTTGTACAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGCAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTTCTAATGGACTTTCTTCTGTCAGGACCAATGAGTTACTGAAAGAAAATAATTCGGAGAAGGCAGAAAAGCCTGAGAGCACATCTTCTTCACCTAGAGCTTCACATACATTAGTATCAAATAATTTGAGGAAGCCTATTGGTGGTAAAAAGCCGGGGAAGAGTGGGGGACTTGGTGCCCGTAAGCTCAATAAAAAGTCAAGTGAGTCTCTCTATGACCAGAAACCTGAAGAACCACCTGCTCCAGTTCCTTCCACGACAAACAACGTGCCTGCCAGGCCATCTTTGACATCTCGTTTTGAGTATGTAGATAATGTTCAATCATCTGAGTTGGATTCTGGAGGTTCAAATGTATTCAATCACGCTTCTGCACCAAAGTCATCAAACTTCTTTGCAGACTTTGGAATGGACGGTGGTTTCCCTAAGAAATTTGGGTCAAACACCTCAAAAGTGCAAATTGAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCCATTTCGTCATCTCAATTTTTTGGAGACCAGAACAAGGCGAGAGATGCTGATACTCGAGCTACTTTGACAAAGTTTTCAAGTTCATCTGCCATCTCCAGTGCTGATCTTTTTGGTGACTCCGGAGATTCCACCATTGATCTTGCTGCTAGTGATCTCATCAATCGATTATCTTTTCAGGCACAACAGGATATCTCTTCCCTCAAGAACATTGCTGGAGAGACTGGGAAAAAACTCAGCACCTTGGCCTCCTCCTTGATGACAGATCTTCAAGACCGAATCCTCTAA 1206 0.4229 MASDGFTDKNLVFRKLKMKSENKMCFDCNTKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWSPEQLKIMSFGGNSRAQIFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEAGLPSSPVASQSSNGLSSVRTNELLKENNSEKAEKPESTSSSPRASHTLVSNNLRKPIGGKKPGKSGGLGARKLNKKSSESLYDQKPEEPPAPVPSTTNNVPARPSLTSRFEYVDNVQSSELDSGGSNVFNHASAPKSSNFFADFGMDGGFPKKFGSNTSKVQIEESDEARKKFSNAKSISSSQFFGDQNKARDADTRATLTKFSSSSAISSADLFGDSGDSTIDLAASDLINRLSFQAQQDISSLKNIAGETGKKLSTLASSLMTDLQDRIL* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4696 401 MobiDBLite consensus disorder prediction 167 181 - -
Tpr4g4696 401 MobiDBLite consensus disorder prediction 227 253 - -
Tpr4g4696 401 CDD ArfGap_ArfGap2_3_like 8 123 - -
Tpr4g4696 401 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Tpr4g4696 401 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Tpr4g4696 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 401 - -
Tpr4g4696 401 MobiDBLite consensus disorder prediction 154 253 - -
Tpr4g4696 401 Pfam Putative GTPase activating protein for Arf 13 106 IPR001164 GO:0005096
Tpr4g4696 401 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Tpr4g4696 401 Gene3D Arf GTPase activating protein 3 140 IPR038508 -
Tpr4g4696 401 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Tpr4g4696 401 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Tpr4g4696 401 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Tpr4g4696 401 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4696 Tpr-Chr4 55337114 55342402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4696 13 91 C2H2 Transcription Factor Family AT4G21160 42.500 2.27e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4696 K12493 K11855 gmx:100785169 651.358