Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4694 ATGGCTGAATACCGCTCACCACCGTTAAATATCTGGACAGACGACAACTCATCTGTCATGGAAGCTTTCATGAGTACAGCCGATCTCTCCAATCTATGGCTTCCAACACCACACTCCGCTACATCAACAACAACCACACCAGCAGCCGACACGAATCGACAACAACAACCACCACAACAGCAGCCTCTTTTCAATCAAGAGACTCTCCAACACCGTCTTCAAGCTTTAATTGAAGGCGCAAAACAGAATTGGACTTACGCCATCTTCTGGCAGCCGTCTTATGACTATTCTACCGCCACGCCACTCCTCGGCTGGGGAGACGGATATTACAAAGGCGAAGATGACAAAGAAAAAGCCAAAAGAGTTACTAGAACCATTACGCTTGAAGAACAAGAGCATCGCAAACAAGTTCTACGTGAACTTAATGCTTTAATTTCTGGCTCCTCTGGCTCTGACGATGTTGTTGACGAAGATGTCACCGACACTGAGTGGTTTTTTCTCACTTCAATGACACAATCTTTCGTCAACAACAGCGGATCATTGAGCCAGGCATACTTTAATTCCACTCCGGTGTGGATCGCCGGAGGTGAGAGGCTTTCTGGTTCCAACTGTGGACGAGCCCGTGTAGCACATGGTCACGGGCTTCAAACCTTTGTATGTATACCAACGCCGTCTTCAAACGGCGTCGTTGAGCTTGGTTCTACGGAGGTAATTCCATATAGCGCTGAGTTAATTGAAAAGATTCGTGTTCTGTTTAATTTCAGCAATCCTGAAGGAGGATCCTGTCCGTTGAATTCCGTTGTAACTGGTCAAAGTGAGAACGATCCTTCCTCTGTTTGGCTCAACGATCTCTCTGGTTCTGCTGCGAATGAAATTCCAGATTCCGTTAACGCCGCTAACGCAACCGTTTCTGCAAAAACGTTGCCGTTTGAAACAAATGGTTCTTCCAGTACTTTAACGGCAACACCAAGCGTCGTCGCTCAGCGTCAGAACCAGAACCAGAGTTTCTTCCCGAAGGAACTGAATTTTTCGAATTCACTGAAACCAGAATCCGGCGAGATTTTGAATTTCGGTGAAAGTAGAAAGAATTCTTACAGCGCCGGTAACGGTAATTTCTTTACCGGTCAGTCACAGTTTGCTGCCGGTGAAGAAAATAGAAAAAGAAGGTCGCCTGCGTCTAGAAACAGCATTGACGATGGAATGCTTTCGTTCACTTCCGGCGTACTCTTACCGGCTTCAAATATGAAATCCGGCGGCGGTGGAGGCGGAGATTCCGATCATTCGGATCTAGAAGTTTCCGTTGTAAAGGAAGGTGACAGCAACAGAGTACTGGAACAAGAGAAGCGGCCACGGAAGCGAGGACGAAAACCGGCCAACGGAAGAGAAGAACCATTGAATCATGTTGAAGCAGAAAGACAGAGAAGAGAAAAGCTTAATCAAAGATTCTACGCTCTACGCGCGGTGGTTCCAAACGTTTCGAAAATGGACAAAGCTTCACTTCTCGGAGACGCAATTTCTTACATAAATGAATTGAAATCAAAGCTTCAAGGACTTGAATCGTCAAAAGGTGAATTAGAGAAACAATTAGATACAACTAAAAAGGAACTTGAACTAGCAAGCAAAAATCCAATTCCATTAGATATAGAAATTGAAAAAACAAGCTCTAAGCTGGTTGATTTGGAGATAGATGTGAAGATTATGGGTTGGGATGCAGTGATTAGGATTCAATGTAGTAAGAAGAATCATCCCGCGGCGAAGTTGATGGCGGCATTGAAAGAATTGGATCTTGAAGTGAATCATGCTAGTGTGTCTGTAGTGAATGATTTGATGATTCAACAAGCTTCGGTTAACATGGGAAGTCGATTTTACACTAAGGAACAGCTTTCATCTGCTCTTTCTTCCAAAATTGGTGATGCACAATGA 1923 0.4457 MAEYRSPPLNIWTDDNSSVMEAFMSTADLSNLWLPTPHSATSTTTTPAADTNRQQQPPQQQPLFNQETLQHRLQALIEGAKQNWTYAIFWQPSYDYSTATPLLGWGDGYYKGEDDKEKAKRVTRTITLEEQEHRKQVLRELNALISGSSGSDDVVDEDVTDTEWFFLTSMTQSFVNNSGSLSQAYFNSTPVWIAGGERLSGSNCGRARVAHGHGLQTFVCIPTPSSNGVVELGSTEVIPYSAELIEKIRVLFNFSNPEGGSCPLNSVVTGQSENDPSSVWLNDLSGSAANEIPDSVNAANATVSAKTLPFETNGSSSTLTATPSVVAQRQNQNQSFFPKELNFSNSLKPESGEILNFGESRKNSYSAGNGNFFTGQSQFAAGEENRKRRSPASRNSIDDGMLSFTSGVLLPASNMKSGGGGGGDSDHSDLEVSVVKEGDSNRVLEQEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESSKGELEKQLDTTKKELELASKNPIPLDIEIEKTSSKLVDLEIDVKIMGWDAVIRIQCSKKNHPAAKLMAALKELDLEVNHASVSVVNDLMIQQASVNMGSRFYTKEQLSSALSSKIGDAQ* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4694 640 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 69 252 IPR025610 -
Tpr4g4694 640 PANTHER MYC 10 637 IPR045084 GO:0003700|GO:0006355
Tpr4g4694 640 Gene3D - 454 542 IPR036638 GO:0046983
Tpr4g4694 640 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 462 511 IPR011598 GO:0046983
Tpr4g4694 640 MobiDBLite consensus disorder prediction 379 401 - -
Tpr4g4694 640 MobiDBLite consensus disorder prediction 429 472 - -
Tpr4g4694 640 CDD bHLH_AtAIB_like 459 535 - -
Tpr4g4694 640 PANTHER TRANSCRIPTION FACTOR MYC2 10 637 - -
Tpr4g4694 640 MobiDBLite consensus disorder prediction 34 60 - -
Tpr4g4694 640 Coils Coil 508 542 - -
Tpr4g4694 640 Pfam Helix-loop-helix DNA-binding domain 466 511 IPR011598 GO:0046983
Tpr4g4694 640 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 465 531 IPR036638 GO:0046983
Tpr4g4694 640 SMART finulus 468 517 IPR011598 GO:0046983
Tpr4g4694 640 MobiDBLite consensus disorder prediction 413 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4694 Tpr-Chr4 55311791 55314777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4694 1 637 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.729 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr4g4694 bHLH-MYC_N 2.5e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4694 K13422 - gmx:100790854 793.112