Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4687 ATGTATAATTATAATTTTGTGGGCATTATATTTTTGTGCGCACCAAGGGGTTTATACAAAGGTATGGGCGCCCCACTCGCTACGGTTGCAGCCTTCAATGCTGTGAATCAGCAGTTTGTTTGTGGAGCTGGAGCTGGTGTTGCTGTTTCCTTTCTTGCTTGCCCAACTGAATTAATCAAATGCAGGTTGCAAGCACAAAGTGCACTTGCTGGCACTGGAACTGCAGCTGTGGCCAGGCAAGTTCTCCGGTCAGAGGGGGGTATGAGAGGTCTTTTCAAAGGCTTGGTTCCCACAATGGCACGTGAGATACCTGGAAATGCAATAATGTTTGGCATATATGAAGCATTAAAGCAACGGTTTGCAGGTGGCACCGATACCTCTGGTCTAAGTAGAGGTTCTCTGATTGTTGCCAGATGCTTGGCTGGAGGTTCTTTCTGGTTCCTTGTTTACCCAACCGATGTTATTAAAAGTGTGCTTCAAGTAGATGATTATAAGAATCCTAAGTTTTCGGGTTCATTTGATGCTTTCAGAAAGATTATGGCTTCTGAGGGATTCAAAGGCCTATATAAAGGTTTTGGTCCTGCAATGGGCAGAAGTGTTCCTGCAAATGCAGCATGCTTCTTAGCATATGAGATGACAAGACCAGCTTTAGGATGA 657 0.446 MYNYNFVGIIFLCAPRGLYKGMGAPLATVAAFNAVNQQFVCGAGAGVAVSFLACPTELIKCRLQAQSALAGTGTAAVARQVLRSEGGMRGLFKGLVPTMAREIPGNAIMFGIYEALKQRFAGGTDTSGLSRGSLIVARCLAGGSFWFLVYPTDVIKSVLQVDDYKNPKFSGSFDAFRKIMASEGFKGLYKGFGPAMGRSVPANAACFLAYEMTRPALG* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4687 218 ProSiteProfiles Solute carrier (Solcar) repeat profile. 129 216 IPR018108 -
Tpr4g4687 218 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 35 218 - -
Tpr4g4687 218 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 14 35 - -
Tpr4g4687 218 Gene3D Mitochondrial carrier domain 6 218 IPR023395 -
Tpr4g4687 218 Pfam Mitochondrial carrier protein 137 216 IPR018108 -
Tpr4g4687 218 Pfam Mitochondrial carrier protein 37 121 IPR018108 -
Tpr4g4687 218 ProSiteProfiles Solute carrier (Solcar) repeat profile. 33 119 IPR018108 -
Tpr4g4687 218 PRINTS Mitochondrial carrier protein signature 51 65 IPR002067 GO:0055085
Tpr4g4687 218 PRINTS Mitochondrial carrier protein signature 94 114 IPR002067 GO:0055085
Tpr4g4687 218 PRINTS Mitochondrial carrier protein signature 144 162 IPR002067 GO:0055085
Tpr4g4687 218 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085
Tpr4g4687 218 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 14 35 - -
Tpr4g4687 218 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 35 218 - -
Tpr4g4687 218 SUPERFAMILY Mitochondrial carrier 15 211 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4687 Tpr-Chr4 55194575 55195454 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4687 55 217 Antiporters AT1G79900 26.829 4.08e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4687 K15109 - gmx:100791908 346.28