Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4676 ATGTCTCTGCCACTGCTGGTTCCTGAAGAGGAACGGCAGAGCAACCCCTCAACGGTAGCATCTGCATCTCCACAGTCCTTGGACTGTTTTTCACAAACCGGAGTTGGATTGAAAGAACGCAATTACCTTGGTTTGTCGGATTGCTCATCGGTGGACAGTTCTACTGTCCCGAGCTTGTCCGATGAGAAAAAAGTGAACCTAAACTTGAAAGCTACAGAGTTAAGGCTGGGACTTCCTGGATCCCAGTCACCTGAAAGGGATCCAGATCTTTTTACATTGAGCTCGACAAATCTTGACGAGAAACCACTTTTCCCTTTGCTTCCCACGAAAGATGGAATCTGCTCAGTGTCTCAGAAAAATGTGGTTTCAGGCAACAAAAGAGGTTTCGCTGACACAATAGATGTGTTCCCTGAGGCGAAATATAATGGTAATGCGCGTGTAAACTTAATGCTATCACCAAGACCTTCTGGAGCTCAGCCTACTACAGTTAAAGAAAAACCAATCAAGGTGTTACAAGAGAGCCCTTGTGCAGCAAATGCAACTGGAGCTCCTACCAATGGCAGTGCACCGGCTGCTAAAGCACAAGTTGTTGGTTGGCCACCTATTAGATCATTTAGGAAAAACTCATTGGCCAACGCTTCAAAGAACAATGATGAAGTGGATGGAAAACCAGGTCCAGCTGCACTCTTTGTGAAGGTTAGCATGGATGGTGCTCCTTATCTAAGGAAGGTTGATCTACGAAACTATACAACGTACCAGGAATTGTCTTCTGACCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCGCATGGAGCTCCGGGAAGAGAAATGTTGAGCGAGAGCAAGTTGAAGGACTTCCTGCATGGTTCTGAATATGTGGTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGAGATGTACCATGGGACATGTTCACTGACACATGCAAAAGGCTGAAAATCATGAAGGGGTCTGATGCAATTGGCTTAGCTCCAAGAGCCATGGAAAAATCCAAGAGCAGGAGCTGA 1047 0.4556 MSLPLLVPEEERQSNPSTVASASPQSLDCFSQTGVGLKERNYLGLSDCSSVDSSTVPSLSDEKKVNLNLKATELRLGLPGSQSPERDPDLFTLSSTNLDEKPLFPLLPTKDGICSVSQKNVVSGNKRGFADTIDVFPEAKYNGNARVNLMLSPRPSGAQPTTVKEKPIKVLQESPCAANATGAPTNGSAPAAKAQVVGWPPIRSFRKNSLANASKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRS* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4676 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 22 341 IPR003311 GO:0005634|GO:0006355
Tpr4g4676 348 MobiDBLite consensus disorder prediction 1 25 - -
Tpr4g4676 348 MobiDBLite consensus disorder prediction 11 25 - -
Tpr4g4676 348 PANTHER AUXIN-INDUCED PROTEIN 22 341 - -
Tpr4g4676 348 Gene3D - 225 342 - -
Tpr4g4676 348 Pfam AUX/IAA family 72 339 IPR033389 -
Tpr4g4676 348 SUPERFAMILY CAD & PB1 domains 226 329 - -
Tpr4g4676 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4676 Tpr-Chr4 55032135 55037143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4676 232 338 B3 DNA Binding Superfamily AT4G23980 30.841 2.82e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr4g4676 AUX_IAA 2e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4676 K14484 - gmx:100500373 555.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1511 2 17874405 17879304 Tpr4g4676 4 55032135 55037143 PCT