Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4621 ATGTATCCATTAATAATGCTTGTTGCATTCTTCCTGTTGGTAGAAGCAGTTGCATCTGATGAACCCCAACAAGCCCTACCAGGCTGCAATAACACTTGTGGAGATATACTAGTTCCATATCCATTTGGCATGGGACATTCAACAACACAAGATAATACACCCTGTTACATGGATTCTAAATTTGAGCTCAAATGCATAAAATCAAAATTAACCTATGGTAAAATGATCCCAGTCCTAGACATAAATCCCCAAAGTCAAATGGTAATGAAATTTTTCGTCTCACGCGTCTGTACTAACAGTAGTAGTAGTAATAATACTGAAGAAGCGAATGAACCTCTTCTCAACGTTTCTTCTTTCACAATTTCAAGCACGGAAAACAAATTCATAACCGTTAGTTGCGACGGTTATGGAATTCTCAACAGTAATTTCAAGAATGCAACTTATTCAATAGGGTGCTTAACAAGATGTCATAATTATGACCATAAAATGGTAATTGGGAATAACACTGGAAAATGCACAGGTTTAGGGTGTTGCCAAGTGGATATTCCTCCACTTATGAAAAATATCACTATACAAACATTTAAATTCCCAACAGAAACAACCACCCAGGAAGATTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTATAATTTTTCTGTAGACCATATAAATAATCTAACTAATCAAACTTTTCCCATGGTTGTTAACTGGGCCGTTACAAATGAATCATGTCAAATAGCAAAAACTACAGATAGCTATGCCTGCAGGGAAAATAGTGAATGTGTCGATAATGATCCAGATTATGAAGGTTACAGATGCAAGTGTTTGGAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCACAGACATTGACGAATGTGCAAAAAATTTACATGGATGCAAAAATAGCGCAAATTGCATCAACACTGCTGGGAATTACACTTGTTTCTGTCCTTTGGGGCAAACCGGTGATGGAACAAAGGAAGGAGGGTGCAAACTACCTGATAGAAAAGCATATTTATATGTTATTGGAGCAATACTTTTTCTTGTTAATGTGTGGATAATTTACTCCTTATACCAAAAGAGGAAACATACCAAATTGAAAGGGAAATTCTTTAGGAAGAATGGAGGTTCTATTTTGGAACAGAAACTTCTCCAAAGAAAAGACTCGTCATCTAAAATAGCTAATATTTTCAAAGAAAGTGAGCTAACGAAAGCCACTAACAACTATGATGAGAGCTTAATCATAGGTAGAGGAAGTTTTGGTACAGTTTTCAAAGGGGAACTAGAAGATAATAGAATTGTTGCTATCAAAATGTCGAAAACAATAGATGAAAGCCAAATTGAGCAATTCATTAATGAGGTGGATGTTGTCTCCCAAATAAATCACAGGAATGTGGTTAAACTCTTGGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTACGAATTCGTCAGCAATGGTACTCTTTCTGATTTTATACACAAAGATAAATTGAATAATCCAACTTGGAAGATTCGTCTTAAGATAGCAACAGAGGTAGCTGGAGCTTTGTCATATCTACATTCAGCTGCTTCAATACCCATTATCCACAGAGATGTCAAGAGTGCTAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAAATTAGTACCACTTGACCAATCTGAAATAGCCACAATGGTGAAAGGAACTATTGGCTACTTACAAAAAATTCGCCTGTTTGCGGCGGGTTTTTAG 1773 0.366 MYPLIMLVAFFLLVEAVASDEPQQALPGCNNTCGDILVPYPFGMGHSTTQDNTPCYMDSKFELKCIKSKLTYGKMIPVLDINPQSQMVMKFFVSRVCTNSSSSNNTEEANEPLLNVSSFTISSTENKFITVSCDGYGILNSNFKNATYSIGCLTRCHNYDHKMVIGNNTGKCTGLGCCQVDIPPLMKNITIQTFKFPTETTTQEDCSYSFIAKQGSYNFSVDHINNLTNQTFPMVVNWAVTNESCQIAKTTDSYACRENSECVDNDPDYEGYRCKCLEGFEGNPYLPGGCTDIDECAKNLHGCKNSANCINTAGNYTCFCPLGQTGDGTKEGGCKLPDRKAYLYVIGAILFLVNVWIIYSLYQKRKHTKLKGKFFRKNGGSILEQKLLQRKDSSSKIANIFKESELTKATNNYDESLIIGRGSFGTVFKGELEDNRIVAIKMSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHKDKLNNPTWKIRLKIATEVAGALSYLHSAASIPIIHRDVKSANILLDGTNTAKVSDFGASKLVPLDQSEIATMVKGTIGYLQKIRLFAAGF* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4621 590 ProSitePatterns Calcium-binding EGF-like domain signature. 292 318 IPR018097 GO:0005509
Tpr4g4621 590 Pfam Wall-associated receptor kinase galacturonan-binding 29 87 IPR025287 GO:0030247
Tpr4g4621 590 ProSiteProfiles EGF-like domain profile. 292 330 IPR000742 -
Tpr4g4621 590 Gene3D Phosphorylase Kinase; domain 1 378 488 - -
Tpr4g4621 590 SMART egfca_6 292 335 IPR001881 GO:0005509
Tpr4g4621 590 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 13 581 - -
Tpr4g4621 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Tpr4g4621 590 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 581 IPR045274 GO:0007166
Tpr4g4621 590 ProSitePatterns Protein kinases ATP-binding region signature. 419 441 IPR017441 GO:0005524
Tpr4g4621 590 SMART egf_5 295 335 IPR000742 -
Tpr4g4621 590 SMART egf_5 244 291 IPR000742 -
Tpr4g4621 590 CDD EGF_CA 292 327 - -
Tpr4g4621 590 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 309 320 IPR000152 -
Tpr4g4621 590 SUPERFAMILY EGF/Laminin 292 327 - -
Tpr4g4621 590 ProSiteProfiles Protein kinase domain profile. 413 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4621 590 SUPERFAMILY Protein kinase-like (PK-like) 397 580 IPR011009 -
Tpr4g4621 590 Pfam Protein tyrosine and serine/threonine kinase 419 565 IPR001245 GO:0004672|GO:0006468
Tpr4g4621 590 Pfam Calcium-binding EGF domain 292 328 IPR001881 GO:0005509
Tpr4g4621 590 Gene3D Laminin 234 286 - -
Tpr4g4621 590 Gene3D Transferase(Phosphotransferase) domain 1 489 582 - -
Tpr4g4621 590 Gene3D Laminin 289 331 - -
Tpr4g4621 590 SMART serkin_6 413 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4621 Tpr-Chr4 54584477 54586556 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4621 4 580 Receptor kinase-like Gene Family AT1G21230 42.185 5.76e-144 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tpr4g4621 PK_Tyr_Ser-Thr 2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4621 - - gmx:100781051 629.787