Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4601 ATGATGATGATGAATGTGTTGAGTAAGAAGAACAAAAATGTTATGTTGTTTTGGTGGCTTGGAATGATTGTGCAACTATGTTTCTTGCTATGTGGTTGTTCTGAGAAAACTTCATTAAGAGGAAGTTCAAAGATTATTAATGGCATGAGATCAACATCTATAGTCAAGCTAAATACAGAAGAAGACCAAAAGCAGTTGGTTGTTGATAATGGCATTGTTTCTGTGACATTATCAAGACCCGAGGGGTACATCCTTGGAATATCGTATAATGGAATTGACAATATTCTTGAATCTAAACTCGAAGAACAAGATAGAGGGTACTTCGACGTTGTTTGGAATGAACCAGAAAAGGTTGGTAATTTCCAGAGAGTCCATGGAACAAACTTTTCAGTTATAGCAGCTGATGAGAATATGGTGGAGCTTTCATTTTTAAGATCATGGACATCTTCCATGATGGGCAAGGATGTCCCAATAAACATAGACAAAAGATACATTTTCAGAAGTGGTGATTCTGGGTTTTATTCATACGTAATCTTCGATCGCCCGGAAGGAATGCCCGCAGCTGAGGTTGATCAAATTAGATATGTTTACAAACTCGATGAAGACAGATTCAAGTACATGGCATTATCTGATACAAGGCAAAGAAGCATGCCATCAATGAAAGATAGAGATACAGGTCAAGTCCTAGCTTACAAAGAAGCAGTTCTATTAACTAAACCAAGTAACCCAGAATTTAGAGGAGAGGTGGATGATAAATATCAATACTCATGTGAGAACACAGATAACACTGTTCATGGATGGATTAGTTTTGATTCTTCTGATGCACCCCCCATTGGATTTTGGATGATAACACCAAGTAATGAGTTTCGCAATGGTGGGCCCAATAAGCAAGATCTTACTTCTCATGTTGGGCCCTACACACTCTCGATGTTTGTGAGCACCCACTATGCTGGCAAGGAAGTAACCATGGCATTTCAAGATGGAGAGACTTATAAAAAGGTTTTTGGTCCTGTATTTGTCTACCTTAACACGGATTCAAAAGAGAATGATAAACTATCTCTCTGGTCAGATGCTGTACAACAGTTGTCAAAGGAAGTCCAAAGTTGGCCTTATGATTTTGTTCAATCACAAGATTACTTTCCACCTAATCAAAGGGGAGCTGTATTTGGAAGATTATTAGTCCAAGATAGGTACTTCAAAGGAGGAAGATTTCAATGTACAAATGCTTATTTGGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTAATGCCAAAGGATACTTTAAAATAAATAATGTTGTGCCAGGTGATTATAATTTGTATGGGTGGGTCCCTGGATTTATTGGTGATTACAAATATAATGCTACAATCACCATCACCCCAGGAGGAATCATAAACTTAAGTTCACTTGTATATAATCCTCCAAGAAATGGACCAACCATTTGGGAAATTGGGATCCCAGATCGTTTAGCTTCGGAATTTCATGTACCTGATCCGTACCCTAGTCTCATGAACAAATTATACGTCGAACAACGCAAAGACAAGTTTAGACAATACGGATTGTGGGAACGTTACACTGATATGTATCCAGATGATGATCTTGTTTACACTGTGGGTGTTAACAAGAATAGGGATTGGTTTTATGCTCAAGTCACAAGAAGCACAGAAAATAAGACATATGAGCCAACAACATGGCAGATTGTATTTGATCATCAACATGACATAATCAGTGGAAACTACACACTACAACTAGCCTTAGCTAGTGCTGCTGATGCTGACCTACAGGTTCGGTTCAATGACCCTAGCATATATCCACCGCACTTTGCGACAGGGCACATAGGAGGAGACAATGCCATAGCAAGGCATGGAATTCATGGATTGTATTGGTTGTTCACCATTGATGTACCAAGTAATCTTCTTGTGAAAGGACAGAACATCATCTATCTGAGACAATCAAAAGCCATTAACCAATTTCAAGGAGTTATGTATGATTATATCCGTTTAGAACATCCACCAACAACTTGA 2064 0.3886 MMMMNVLSKKNKNVMLFWWLGMIVQLCFLLCGCSEKTSLRGSSKIINGMRSTSIVKLNTEEDQKQLVVDNGIVSVTLSRPEGYILGISYNGIDNILESKLEEQDRGYFDVVWNEPEKVGNFQRVHGTNFSVIAADENMVELSFLRSWTSSMMGKDVPINIDKRYIFRSGDSGFYSYVIFDRPEGMPAAEVDQIRYVYKLDEDRFKYMALSDTRQRSMPSMKDRDTGQVLAYKEAVLLTKPSNPEFRGEVDDKYQYSCENTDNTVHGWISFDSSDAPPIGFWMITPSNEFRNGGPNKQDLTSHVGPYTLSMFVSTHYAGKEVTMAFQDGETYKKVFGPVFVYLNTDSKENDKLSLWSDAVQQLSKEVQSWPYDFVQSQDYFPPNQRGAVFGRLLVQDRYFKGGRFQCTNAYLGLALPGDAGSWQRESKGYQFWTQANAKGYFKINNVVPGDYNLYGWVPGFIGDYKYNATITITPGGIINLSSLVYNPPRNGPTIWEIGIPDRLASEFHVPDPYPSLMNKLYVEQRKDKFRQYGLWERYTDMYPDDDLVYTVGVNKNRDWFYAQVTRSTENKTYEPTTWQIVFDHQHDIISGNYTLQLALASAADADLQVRFNDPSIYPPHFATGHIGGDNAIARHGIHGLYWLFTIDVPSNLLVKGQNIIYLRQSKAINQFQGVMYDYIRLEHPPTT* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4601 687 CDD RGL4_N 65 350 - -
Tpr4g4601 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 686 - -
Tpr4g4601 687 Pfam Polysaccharide lyase family 4, domain II 408 478 IPR029413 -
Tpr4g4601 687 Pfam Polysaccharide lyase family 4, domain III 493 681 IPR029411 -
Tpr4g4601 687 SUPERFAMILY Galactose mutarotase-like 57 350 IPR011013 GO:0003824|GO:0005975|GO:0030246
Tpr4g4601 687 CDD RGL4_M 384 483 IPR029413 -
Tpr4g4601 687 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 57 686 - -
Tpr4g4601 687 Gene3D - 490 682 - -
Tpr4g4601 687 SUPERFAMILY Starch-binding domain-like 380 481 IPR013784 GO:0030246
Tpr4g4601 687 Pfam Rhamnogalacturonate lyase family 55 249 IPR010325 -
Tpr4g4601 687 Gene3D - 57 360 IPR014718 GO:0030246
Tpr4g4601 687 CDD RGL4_C 495 682 - -
Tpr4g4601 687 Gene3D - 382 482 - -
Tpr4g4601 687 SUPERFAMILY Galactose-binding domain-like 490 682 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4601 Tpr-Chr4 54307056 54318881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4601 64 686 Polysaccharide Lyase AT1G09910 54.792 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4601 K18195 - gmx:100776664 1060.44