Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4589 ATGGATTTGTCAAAAAATCAAAAGCAGATACTAAGAGTGCCGAAACTTGAAGGTTTTGGTGAGACGGATATTAAACCGAATGTTGGAATTCAAATGGGTTCTACAACTACTATTGTCAACAACTTTGTTCCTAAGTTGGATTTCTTGGATTTGAACAAAAAAACTCGTTCGATAGGTATTGAGTTAGGTGATTCTTCTTCCAAAGTTGCAGTGGATTGTGATAGTTCCAAAATTGCTGCTACTACTCATACCATTGGCCAACGAAGTTCAATCTACAGAGGAGTCACAAAGCACAGATGGACAGGTAGATATGAAGCACATCTATGGGACAACAGCTGTAAACGAGAGGGTCAGGTCAGGAAAGGGCGTCAAGTGTATTTGGGTGGGTATGATAAGGAAGAAAATGCAGCAAGGGCTTATGATTTGGCAGCACTCAAGTTCTGGGGATCAGGAGCTACTACAAATTTTCCTGTTTCCCATTATGCAAAGGAATTAGAGGAGATGAAAGATGTAGGAAACCAAGAATTTGTTGCTTCACTGCGAAGGAAAAGCAGTGGTTTTGCTAGGGGTGCTTCCATGTACCGGGGTGTTACAAGGCACCATCAACAGAGTAAATGGCAAGCACGAATTGGTCGAGTTGCTGGAAACAAAGATCTCTACTTGGGAACATTTGCTACTGAAGTGGAAGCTGCAGAAGCATACGACATTGCTGCCATAAAGTTTAGAGGTGCAGAAGCTGTAACCAATTTTGAGGCGAGTAGATACAATATGAGAGCTATATCACAGATTTCTCTTCCAGTTAGCGGAGCAGCAAAACGCTTGAAACCTTCTCAACAATCAGAGATCAATTTTCTGCCAATTGCTTCTGTACCATATGGTTCTGCAACACAGTATTTCCCCAACAATCACTTCCATCATTTTAATCCAACTACCAATGAAGAAAGTAGCACAGCAGAGTCTACTCCAACTACAACCAATGCAGCAGCTGAGTTATTCCTTTGGCCCCGTTAG 1011 0.4184 MDLSKNQKQILRVPKLEGFGETDIKPNVGIQMGSTTTIVNNFVPKLDFLDLNKKTRSIGIELGDSSSKVAVDCDSSKIAATTHTIGQRSSIYRGVTKHRWTGRYEAHLWDNSCKREGQVRKGRQVYLGGYDKEENAARAYDLAALKFWGSGATTNFPVSHYAKELEEMKDVGNQEFVASLRRKSSGFARGASMYRGVTRHHQQSKWQARIGRVAGNKDLYLGTFATEVEAAEAYDIAAIKFRGAEAVTNFEASRYNMRAISQISLPVSGAAKRLKPSQQSEINFLPIASVPYGSATQYFPNNHFHHFNPTTNEESSTAESTPTTTNAAAELFLWPR* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4589 336 Gene3D AP2/ERF domain 91 159 IPR036955 GO:0003700|GO:0006355
Tpr4g4589 336 Gene3D AP2/ERF domain 193 252 IPR036955 GO:0003700|GO:0006355
Tpr4g4589 336 ProSiteProfiles AP2/ERF domain profile. 193 251 IPR001471 GO:0003700|GO:0006355
Tpr4g4589 336 SUPERFAMILY DNA-binding domain 90 159 IPR016177 GO:0003677
Tpr4g4589 336 SUPERFAMILY DNA-binding domain 192 252 IPR016177 GO:0003677
Tpr4g4589 336 CDD AP2 90 159 IPR001471 GO:0003700|GO:0006355
Tpr4g4589 336 Pfam AP2 domain 194 243 IPR001471 GO:0003700|GO:0006355
Tpr4g4589 336 Pfam AP2 domain 91 149 IPR001471 GO:0003700|GO:0006355
Tpr4g4589 336 SMART rav1_2 91 163 IPR001471 GO:0003700|GO:0006355
Tpr4g4589 336 SMART rav1_2 193 257 IPR001471 GO:0003700|GO:0006355
Tpr4g4589 336 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Tpr4g4589 336 PRINTS Ethylene responsive element binding protein signature 233 253 IPR001471 GO:0003700|GO:0006355
Tpr4g4589 336 CDD AP2 192 253 IPR001471 GO:0003700|GO:0006355
Tpr4g4589 336 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 81 282 - -
Tpr4g4589 336 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 81 282 - -
Tpr4g4589 336 ProSiteProfiles AP2/ERF domain profile. 91 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4589 Tpr-Chr4 54183849 54186578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4589 81 281 AP2-EREBP Transcription Factor Family AT1G51190 76.847 8.31e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Tpr4g4589 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4589 K09285 - gmx:100777168 367.466