Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4588 ATGGATGCAACTCAATATGAAAAAATCTATGTTGCAGTTGGCTATGATGTGGTAGATGGATTTCAAACATTGGATTGGGCTCTCAAGAAATGGAATTCTCATCCAAATATTTCTATAATCATTTTACATGTTAACTACAATACTTCCAATGATTATGTTTATACACTTCTTGGAAAACTCCCTGCAAAAGGTGCATGTGAAGAAAAACTAGAACGTATCAGGAAATATGAGCAAAACATAATCAACAATTTGCTTTCCAAGTATATAGCTTTATGTGACAAAGTTCCAGCTGAAACATTTGAGGTTGAGAAATTTGATGAACCAATGCATAATCTCACTATAGACTTGATCCTTGGTCTTGGAATAACCAAATTGGTCATTGGATTTTCATTCATGAGGCCTTCCATGAAATCAAAAGATGTCATGAATGGATTATTCTATGTTCATCAATACAAGCCTGAATTTTGTGAGTTGTTCATAATATGTGGAGGAAAACAAGTTTCACCAAGAGTGAACAATGATGAAATAACCATGGAGGATGATAGTGGAGTCAAGGTTGCTAAAATGAGAGATAACAAAACAAATTTTATAGATTGGATAGAAAGAGTGTTCTGTGATAAAACCATTGATTCCAACGAAAGAGTTTCAAATTCAAGTAGATCATCAACTTCCTCAACAAATTTTGAGGCACATCTTGACCAAAACCAGTGGGAATTTTATGTCCAAGAAATTAATAATTATTTTCAAGAGTTACTGTCCTTAAATATGGAAGGAGGAAATTGTGAACAAGAATTTGATGATGATGATGATTCATTTATTAGTTCAATCGAGGCTGCATATGTCCAACAACTTAAAAATTCTGATATTCAGAGTGCTGAAGGAAAATTTGAGATCCTCACATATAAACTGAATGAAGCTTATAATACAATCCAAATGAAAAGAAAAGAAGAAAAGGACAATTTGGATAGGCATGCAAAAGCTGAATGGGCGATTTATATATGCAATCGTCAGGAAGAAGAACTTGAATATCTAAAAAGTGAAGAAGTGACAAAAAGGGAAGAGCTAAAGAAAGAACTTAATGTAGAAAAAGAACAAATTCAAAAAATTAGAATGAATGTTGAAGAGAGCAAACAAAGGCTTAGCTCATTGGTAGAGCAACAACTAGACCTAAAAAATAAGCTTCATGTTTCCACATTGGAAATTTCAGAATGTGAAACCAAACTTGAGAATGTAATGGCTGCAAGGACAGAGATGTTAATGGTGATTGAGGAGCTAAGTAGACAAAGGGATGTGTTGAACAAAAGGGTTATGTTTTTCAAAGAAAAAGAAGATGACAATAATGAAATTAGTAATATTAATGAGAAGAGTTTTTATTTAAGAGAGTATACTAAGGAAGAGATCATGTTGGCCACCAACAACTTTTCAGAATACTTTAGGTTGAAATCTTGTGGGGATTGGAGTAATGTTTATAGAGGAAACATTAATCATTCCAATGTTGCAATCAAGATGCTTGGTTCTACTTTTGCCTTGTCCCAACAAGATTTCCAAGCTAAGGTAAATATTCGGCATCCTCATCTAGTTGCTGTATTGGGCTTCTGCTCTGAGCCCAAATGCTTAGTTTTGGAATACATGCAAAATGGAAACTTGGAAGACAAGCTACTTTGCAAGACTATAAGCTGGCAAGATTGCATAAAGATAGCCATAGAAGTTTGTTCTGGGCTGGGCTTTCTAAATTCATTTCAGCCCAGGCCCATTATTCATTGTCACATTTCTCCATCCAACATTCTCCTAGACAACAATCTTGTTGCAAAGGTGACATTTTGTTTTCATGGTTGCAATGAAGAATGTAATGTTGGGTTAGTTGTGAAAGAAATTGGAATTTTGTTGTTGCATATATTGACTGGAAGAGGAAATTGGGGGACAATTGATATGGAAGCCTTTTATGATGAGATTGGTGAAGAATGGCCATTTGATGTAGCAAGAGAACTTTTGGACTTAGCAACGAGGTGCATGTCCAATGTAGAAGAAATGAGTATAAGAAAAATCATGGAAGAACTCAATGAAATCAAAAGAAAAGGTTGTGACTCCATTAAAGTGCCTAATATTTTCCTTTGCCCAATCCAAAAGAGAGTAATGAGAAATCCATACATAGCAGCAGATGGATTTTCTTATGAGCTGGAAGCAATAGAAGAGTGGTTGCAATCTGGAAATGACATATCACCCAAAAGCTTGAGGCTGAAGAATACATTACTTTTACCTAATCATAACCTCCGTTCCCTAATTCAGTATTGGCATAGCAAGAGATCAGCTAATCAAGTTGTCAAATAA 2328 0.3471 MDATQYEKIYVAVGYDVVDGFQTLDWALKKWNSHPNISIIILHVNYNTSNDYVYTLLGKLPAKGACEEKLERIRKYEQNIINNLLSKYIALCDKVPAETFEVEKFDEPMHNLTIDLILGLGITKLVIGFSFMRPSMKSKDVMNGLFYVHQYKPEFCELFIICGGKQVSPRVNNDEITMEDDSGVKVAKMRDNKTNFIDWIERVFCDKTIDSNERVSNSSRSSTSSTNFEAHLDQNQWEFYVQEINNYFQELLSLNMEGGNCEQEFDDDDDSFISSIEAAYVQQLKNSDIQSAEGKFEILTYKLNEAYNTIQMKRKEEKDNLDRHAKAEWAIYICNRQEEELEYLKSEEVTKREELKKELNVEKEQIQKIRMNVEESKQRLSSLVEQQLDLKNKLHVSTLEISECETKLENVMAARTEMLMVIEELSRQRDVLNKRVMFFKEKEDDNNEISNINEKSFYLREYTKEEIMLATNNFSEYFRLKSCGDWSNVYRGNINHSNVAIKMLGSTFALSQQDFQAKVNIRHPHLVAVLGFCSEPKCLVLEYMQNGNLEDKLLCKTISWQDCIKIAIEVCSGLGFLNSFQPRPIIHCHISPSNILLDNNLVAKVTFCFHGCNEECNVGLVVKEIGILLLHILTGRGNWGTIDMEAFYDEIGEEWPFDVARELLDLATRCMSNVEEMSIRKIMEELNEIKRKGCDSIKVPNIFLCPIQKRVMRNPYIAADGFSYELEAIEEWLQSGNDISPKSLRLKNTLLLPNHNLRSLIQYWHSKRSANQVVK* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4588 775 SMART Ubox_2 702 764 IPR003613 GO:0004842|GO:0016567
Tpr4g4588 775 Pfam U-box domain 699 768 IPR003613 GO:0004842|GO:0016567
Tpr4g4588 775 PANTHER OS02G0152300 PROTEIN 4 767 - -
Tpr4g4588 775 Coils Coil 422 442 - -
Tpr4g4588 775 SUPERFAMILY Protein kinase-like (PK-like) 448 671 IPR011009 -
Tpr4g4588 775 Pfam Protein tyrosine and serine/threonine kinase 484 606 IPR001245 GO:0004672|GO:0006468
Tpr4g4588 775 ProSiteProfiles Protein kinase domain profile. 475 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4588 775 PANTHER U-BOX KINASE FAMILY PROTEIN 4 767 - -
Tpr4g4588 775 Coils Coil 345 393 - -
Tpr4g4588 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 773 IPR013083 -
Tpr4g4588 775 SUPERFAMILY RING/U-box 696 769 - -
Tpr4g4588 775 ProSiteProfiles U-box domain profile. 698 771 IPR003613 GO:0004842|GO:0016567
Tpr4g4588 775 Gene3D Phosphorylase Kinase; domain 1 442 543 - -
Tpr4g4588 775 Gene3D Transferase(Phosphotransferase) domain 1 548 693 - -
Tpr4g4588 775 CDD RING-Ubox_WDSUB1_like 703 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4588 Tpr-Chr4 54168571 54173889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4588 3 770 U-box Gene Family AT5G65500 42.125 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tpr4g4588 PK_Tyr_Ser-Thr 6.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4588 - - gmx:100795815 936.791