Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4582 ATGGCCAACCTCTCTAATGTGATAGAATTGGGTAAGAGTAGTGAAGAGAAGAAAGAAGCACAAGAATTAGAAGATGACGAAAGTTTCTCATATGCTATGCCACTTTGCAACTTTAGTGTGTTCCCAATGGCACTTCAATCTACAGCTGAGCTTGGCATTTTCGATGTATTGCAAAAAGCCGGTAAAGGTGCTCAATTGTCGGCCGAAGAGATTACGGCCCGTCTTTCATGTAACAATCCGGATGCTCCTAAAATGTTGGATCGCATTCTTTCTCTTCTTGCCTCACATGATGTGTTGAAGTGTTTGGTGTTTCAAGATCAACAAAAACTTGAATCCTTTCATAGACTTTATAGTATGGCTCCTGTTGCTAAATCTTTGCTCCTAATTCTGATGGTGTTTCATCAGGACCATTGTTGTCTTTCTTGCAAGATAAGGTTTTATTAG 444 0.3986 MANLSNVIELGKSSEEKKEAQELEDDESFSYAMPLCNFSVFPMALQSTAELGIFDVLQKAGKGAQLSAEEITARLSCNNPDAPKMLDRILSLLASHDVLKCLVFQDQQKLESFHRLYSMAPVAKSLLLILMVFHQDHCCLSCKIRFY* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4582 147 Pfam Dimerisation domain 43 94 IPR012967 GO:0046983
Tpr4g4582 147 SUPERFAMILY "Winged helix" DNA-binding domain 24 127 IPR036390 -
Tpr4g4582 147 Gene3D - 10 126 IPR036388 -
Tpr4g4582 147 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE-LIKE ISOFORM X1 15 142 - -
Tpr4g4582 147 PANTHER O-METHYLTRANSFERASE 15 142 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4582 Tpr-Chr4 54082474 54082917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4582 10 126 Monolignol Biosynthesis Gene Families AT5G54160 39.496 2.41e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4582 K13066 - mtr:MTR_8g068730 175.637