Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4577 ATGTATGTTGCTGGTCGTACTGGTGGTGAATGTGAATCAAGGTGGTTGAATTGTGAAGACCCTTTGATCAACCATGGCCCATGGACTTTAGAAGAGGATAGGTCTCTTTTGACTATTGTCCAAGAGAAGGGCATCAGGAACTTGTTTGATATTGCTGTATCATTGGCCACAAACAGGATTCCATTTCAATGTTTGGCACGATTCAAAAGGAGCTTAAATTCTTCGATGATAAATAGTGAATGGACTGAGGAAGAAGATGCCCAACGTTGTTCTGCTGTTGCATATTTTGGTGATAGTAATTGGCAGAATGTTGCTTCTGTTTTAGAACGGCGGACGGGAACCCAGTGCTCGAATAGATGGAAAAAATCAATTTGTCCTGTGAGGAAAGGGAGCTTTACTCTCAAGGAGGATGAACGCCTTACAGTAGCAGTCATGCTGTTTGGCCGGAAATGGAATCAAATAGCCAAATATGTTCCTGGCAGGATCCAATCTCAGTGTAGGGACAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGTGGGTGGACTGAGGATGAGGATTTAAGATTAGAAGCTGCAATCACCAAGTATGGATATTGCTGGTCTAAGGTTGCGGAATATGTGCCTCTCCGCACCGATTCCCAATGCCGAAAATGGAAGGTGATATGTCATGAACAAGTTCCTCTGCTTCAAGAAACAAGAAAGCGGCAAAGGTCTCTTCTTGCCGGTAACTTTGTCGATCGAGAATCTGAACGTCCAGCCCTTACACCGAATGACTTTATTCCTTTACGAATGGTAGCTTCACCATCTGATGTTGGTGCGAAAATCTCCAAAGGAAGCGGAAGAGACAGTCGAGATAAACAGGTTGATCGAGATATCATGGTCTGCAAGCATGGAGTTCAGATGCTTGATTATGCTAGTTGA 927 0.4358 MYVAGRTGGECESRWLNCEDPLINHGPWTLEEDRSLLTIVQEKGIRNLFDIAVSLATNRIPFQCLARFKRSLNSSMINSEWTEEEDAQRCSAVAYFGDSNWQNVASVLERRTGTQCSNRWKKSICPVRKGSFTLKEDERLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEDEDLRLEAAITKYGYCWSKVAEYVPLRTDSQCRKWKVICHEQVPLLQETRKRQRSLLAGNFVDRESERPALTPNDFIPLRMVASPSDVGAKISKGSGRDSRDKQVDRDIMVCKHGVQMLDYAS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4577 308 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Tpr4g4577 308 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Tpr4g4577 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 228 IPR017930 -
Tpr4g4577 308 Pfam Myb-like DNA-binding domain 182 218 IPR001005 -
Tpr4g4577 308 Pfam Myb-like DNA-binding domain 129 172 IPR001005 -
Tpr4g4577 308 ProSiteProfiles Myb-like domain profile. 73 124 IPR001005 -
Tpr4g4577 308 SMART sant 128 176 IPR001005 -
Tpr4g4577 308 SMART sant 179 226 IPR001005 -
Tpr4g4577 308 SMART sant 24 74 IPR001005 -
Tpr4g4577 308 SMART sant 77 126 IPR001005 -
Tpr4g4577 308 CDD SANT 27 72 IPR001005 -
Tpr4g4577 308 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 1 288 - -
Tpr4g4577 308 CDD SANT 131 174 IPR001005 -
Tpr4g4577 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 122 IPR017930 -
Tpr4g4577 308 CDD SANT 183 221 IPR001005 -
Tpr4g4577 308 ProSiteProfiles Myb-like domain profile. 175 218 IPR001005 -
Tpr4g4577 308 Pfam Myb-like DNA-binding domain 28 88 - -
Tpr4g4577 308 Gene3D - 181 226 - -
Tpr4g4577 308 Gene3D - 126 180 - -
Tpr4g4577 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Tpr4g4577 308 ProSiteProfiles Myb-like domain profile. 128 174 IPR001005 -
Tpr4g4577 308 CDD SANT 80 122 IPR001005 -
Tpr4g4577 308 Gene3D - 22 71 - -
Tpr4g4577 308 Gene3D - 72 123 - -
Tpr4g4577 308 SUPERFAMILY Homeodomain-like 126 218 IPR009057 -
Tpr4g4577 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 178 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4577 Tpr-Chr4 53984686 54014593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4577 1 264 MYB-Related Transcription Factor Family AT3G18100 55.639 3.09e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr4g4577 Myb_DNA-bind_6 2.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4577 K09422 - gmx:100818474 457.218