Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4558 ATGGAAATCGAAGAAAAAAATGACGAGATAGTGATGAGTACTAAAGCTGACACAGTGACAATTAACTCATCACGAATGAAAACGTCAACCCAAGTTGAGAAATCTCCTATGTATGTTCAAAACAATAGTATCAAGTCAAATTTCAAGGAATGTTTAAAGAATCATGCTTCTAGCATAGGTGGTTATGCTATTGATGGCTGCTGTGAGTTTTTACCAACAAGTGAAGAAGGAAGCATAGAGTTTTATAAATGTGCGGCATGCAGTTGTCATAGAAACTTTCATCGGAAAGAGACAGTTGTTGTGCCCGAAGATGTGACACCTTTGTTGTTCAATAACCCATGTCAGCTTTCACCTTCGACTCCTTTCAAAGCGTATTATCATACATCAAATGATAATCATCATGTGACTGGAGCATCAAGGGGGACTGGAACTACTTTAGCTCTACCTTCATCTGATGGAGCCCACATCTCGAGGGGGGGTAATGAAGAAAATGTTCATGTTCATCATGTTTTAGAGCATATCCAAGGTTGTGGAGAAGGTTCGTCGAATTCGAAGAAGAGGTTCAGGACGAAGTTCACTACCAAACAAAAGGAGATGATGATGGATTTTGCTATAACATTGGGTTGGAAGATCCAAAAGAAAGATGGGAATATTGTTGAGGAGTTTTGTAAGCAAATTGGGGTGCAGCGTCATGTATTTAACATTTGGATACATAACAACAAGCATACCTTGGGTAAAATGCCCTAG 747 0.3922 MEIEEKNDEIVMSTKADTVTINSSRMKTSTQVEKSPMYVQNNSIKSNFKECLKNHASSIGGYAIDGCCEFLPTSEEGSIEFYKCAACSCHRNFHRKETVVVPEDVTPLLFNNPCQLSPSTPFKAYYHTSNDNHHVTGASRGTGTTLALPSSDGAHISRGGNEENVHVHHVLEHIQGCGEGSSNSKKRFRTKFTTKQKEMMMDFAITLGWKIQKKDGNIVEEFCKQIGVQRHVFNIWIHNNKHTLGKMP* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4558 248 Pfam ZF-HD protein dimerisation region 47 98 IPR006456 -
Tpr4g4558 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 22 246 - -
Tpr4g4558 248 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 246 - -
Tpr4g4558 248 SUPERFAMILY Homeodomain-like 173 246 IPR009057 -
Tpr4g4558 248 Gene3D - 173 245 - -
Tpr4g4558 248 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 48 97 IPR006456 -
Tpr4g4558 248 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 185 241 IPR006455 -
Tpr4g4558 248 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 48 97 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4558 Tpr-Chr4 53804151 53804897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4558 45 244 ZF-HD Transcription Factor Family AT4G24660 42.574 2.08e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr4g4558 ZF-HD_dimer 5.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4558 - - mtr:MTR_2g076780 227.639