Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4525 ATGATCATTTCCGAGAAAAATCGTAGAGAGATCTCCAAATACCTCTTCCAAGAGGGAGTTTGTTATGCAAAGAAGGATTACAATCTTGCAAAGCATCCAGATATTGATGTACCAAATCTGCAAGTGATTAAGCTCATGCAGAGCTTCAAATCAAGGGAATATGTCAGGGAAACTTTTGCTTGGATGCACTATTACTGGTTTCTTACCAATGATGGAATTGAGTTCCTTAGGACTTACCTCAATCTTCCATCTGAGATTGTGCCAGCTACTTTGAAGAAACAGGCTAAGCCAGTTTTTGCAAGGCCATTCGGCGGTGATCGCCCTAGGGGTCCACCTAGATTCGAGGGACAAAGGAGATTTGGTGGTGACCATGATGGTTATCGTGGAGGTCCTAGAGGACCTGGTGGTGAGTTTGGTGGAGAAAAGGGTGGAGCTCCAGCCGACTATAGACCTTCTTTCGGGGTAATCTTATTCAATGTAGTCAGGTTCGAGATCCTACGTAGGATCGGTAGGCTGGTTGAGAATCGTAAGATCGGGATCGTAGCTCGATTCGTAAGATCCTACTCAAGGGTAAAATTGTAA 582 0.445 MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPDIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPVFARPFGGDRPRGPPRFEGQRRFGGDHDGYRGGPRGPGGEFGGEKGGAPADYRPSFGVILFNVVRFEILRRIGRLVENRKIGIVARFVRSYSRVKL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4525 193 Gene3D - 1 104 IPR036388 -
Tpr4g4525 193 PANTHER 40S RIBOSOMAL PROTEIN S10 1 154 IPR037447 -
Tpr4g4525 193 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 1 154 - -
Tpr4g4525 193 Pfam Plectin/S10 domain 3 94 IPR005326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4525 Tpr-Chr4 53413154 53414076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4525 1 153 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 76.774 6.11e-70 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4525 K02947 - csv:101212088 249.595