Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4513 ATGGAAATCAGTATTCCTTCAATGGCACAAGAAACCTTTGGAGATGATTCACAACAAAAACATCTTGATCGCTTAAAAGAGCAAGTTCATTTGGTTAAAAGGAAAGACTGTGAACGCTACGAGGTTGCTCCAATCCAAAGCAAACTATCATTTGAGAATGGTTTTTTTATAGTGTTTCATGCATGCCAACTGTTGATCCAGAAAAATGATGGAATGATATTAATAGGGGTGGGGGGTCCTTCAGGGGCTGGAAAGACTGTGTTTTCTGAAAAGATATTCAACTCCATGCCTGACGTTGCGGTCATTTCAATGGACAATTACAATGATTCTAGTAGAATTGTCGATGGAAACTTCGATGACCCTCGCCTAACAGACTATGAAACGTTGCTCAGAAATGTACATGATTTAAAGGCAGGAAAGCCAGTTGAAGTTCCTGTGTACGATTTCAAATCCAGTTCACGTACAGGATACAGGACGGTTGAAGTGCCGAGCTCTCGCGTTGTGATTATAGAGGGCATTTATGCTTTGAGTGAGAGATTGCGACCTCTACTAGACCTTCGAGTATCTGTAACAGGCGGTGTTCATCTTGACCTTGTTAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTCAAGAAATTATCCATCAAATATCAGAGACGGTATATCCAATGTACAAGGCTTATATTGAGCCAGATCTCCAAACAGCACACGTAAAAATAACCAACAAGTTTAATCCATTTTTTGGATTCCAAAGCCCTACTTACATATTAAAGTCAACCAGGAACGTAACAGCGGATCAAATTAAAGCCGTTATCTCCCAAGATTTTGAGGAAACAACTGAGCAAACTTATGACATATATCTTTTACCACCCGGTGAAGATCCGGAGAGCTGTCAATCATATTTACGGATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACTGATGATCCATTTGTCATATCACCAAGAATTACTTTCGCGGTCAGTGTGCGTCTTCTTGGTGGACTAATGGCCCTTGGATACACAATAGCAACTATCCTTAAAAGAAGCAGTCATGTCTTATCTGATGATAGGGTTTGTGTTAAACTTGATTGGCTTGAGCAACTAAATCGACATTATGTTCAGGTACAGGGAAAAGATCGATTAGTTGTAACATACATAGCACAACAATTGGATTTGGAAGGTTCGTACGTTCCCCGTACCTACATTGAGCAGATTCAACTTGAAAAGCTTGTAATGGCCATGCCAGATGATTTAAAGACTAAGCTCAACCTTAATGAGGATTTGGTAACAAGTCCCAAAGCAGCATTTTTTAGAACCTCTAATGACGGGGTTCCCATTAGACATAAACGTATAAGAAGTGATACATCGCATTCAAGTACAAATAAAAAAGATGAGAATGAATCCAAAGTAACTGAATTCGTTTCAAACAATCGAGGACTTCATGAAAATAATAATTCAGATTCTGAAACAAAACAAGAAAATCAAGGTTCCATTACTCAGCTTTCAGAACAAATTTCATCCCTGCATGATAGAATGGACGAGTTTACAAATCGTATTGAAGAGCTGAACACAAAGTTAACCATCAAGGAAAAATCTCCAAGTCAACAAAATATGGACCTGCAAGCTGAGTCCTATGATGGTTCTGTTCCCACCTCTTGCCTCATTACTAGTTTGAGTAATGGTTCCCTAAATGGATCTATTATGTCAAATCCCTCATTGCCATCACAATTAGCTAAGGAGTCACCTTTAAGAAACGAGATATCAGATATTGCACAGGGTCAACGTCAGATAATGAATCAGTTAGACAATTTGAATAATCTTTTCTGTGGAAATTTGGAAGAGAAGTATCATCAAACAAGAACCAACAGGAAAAGTGTAATGGTGGCAGTGGCTATTGGTTGTTTGGGGATCTTCTTAATGAAGGGTTTGTCAACCTGA 1968 0.3897 MEISIPSMAQETFGDDSQQKHLDRLKEQVHLVKRKDCERYEVAPIQSKLSFENGFFIVFHACQLLIQKNDGMILIGVGGPSGAGKTVFSEKIFNSMPDVAVISMDNYNDSSRIVDGNFDDPRLTDYETLLRNVHDLKAGKPVEVPVYDFKSSSRTGYRTVEVPSSRVVIIEGIYALSERLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPQEIIHQISETVYPMYKAYIEPDLQTAHVKITNKFNPFFGFQSPTYILKSTRNVTADQIKAVISQDFEETTEQTYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDDPFVISPRITFAVSVRLLGGLMALGYTIATILKRSSHVLSDDRVCVKLDWLEQLNRHYVQVQGKDRLVVTYIAQQLDLEGSYVPRTYIEQIQLEKLVMAMPDDLKTKLNLNEDLVTSPKAAFFRTSNDGVPIRHKRIRSDTSHSSTNKKDENESKVTEFVSNNRGLHENNNSDSETKQENQGSITQLSEQISSLHDRMDEFTNRIEELNTKLTIKEKSPSQQNMDLQAESYDGSVPTSCLITSLSNGSLNGSIMSNPSLPSQLAKESPLRNEISDIAQGQRQIMNQLDNLNNLFCGNLEEKYHQTRTNRKSVMVAVAIGCLGIFLMKGLST* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4513 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 245 IPR027417 -
Tpr4g4513 655 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 11 639 - -
Tpr4g4513 655 Pfam CYTH domain 276 411 IPR023577 -
Tpr4g4513 655 CDD UMPK_like 74 246 - -
Tpr4g4513 655 MobiDBLite consensus disorder prediction 482 511 - -
Tpr4g4513 655 Coils Coil 508 542 - -
Tpr4g4513 655 Pfam Phosphoribulokinase / Uridine kinase family 74 243 IPR006083 GO:0005524|GO:0016301
Tpr4g4513 655 PRINTS Uridine kinase signature 72 89 - -
Tpr4g4513 655 PRINTS Uridine kinase signature 139 154 - -
Tpr4g4513 655 PRINTS Uridine kinase signature 195 205 - -
Tpr4g4513 655 PRINTS Uridine kinase signature 231 244 - -
Tpr4g4513 655 Gene3D - 72 255 IPR027417 -
Tpr4g4513 655 MobiDBLite consensus disorder prediction 457 481 - -
Tpr4g4513 655 MobiDBLite consensus disorder prediction 457 511 - -
Tpr4g4513 655 PANTHER URIDINE KINASE 11 639 - -
Tpr4g4513 655 ProSiteProfiles CYTH domain profile. 255 417 IPR023577 -
Tpr4g4513 655 SUPERFAMILY CYTH-like phosphatases 276 414 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4513 Tpr-Chr4 53248464 53256426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4513 73 243 PRT Gene Family AT5G40870 30.000 1.04e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4513 K00876 - gmx:100781286 971.459