Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4495 ATGAAACCTATGCATTCTCAATCGTTTGAAAATAAAGATCAAGCTCTTGTCGTCATTCCGGAGAGACAAGAGTCAAACTCGCAGGTTTTTGTGGTAAGGAACATGGCTAATCGGGTGATGCAGCTAGTAAGGATGTCAGATCTAACTGTGAAGAATCAAATAAATTCACGTGAGTTGATAAGGAAAACTAGATTGGTTTATGATTCACTTCGCGCTGTAGTGAGTATCGAGGAGGAGGAGAAGAGGATTGCAGTAGAAAGGAGAATGACGGCTGAAGTTGCGGTTATGGAGGAAGAGATGAGACTGATGGAGGAGAGGAGGCTGGCGGAAGAGAGAAGTTTGGTTGATGAGGTTGCGCTGATGGAGGTTGAGATGAGAGTAGGTGAAGCGAGGATTGTGGAGGGAGCTGCAAGGGTTGATGTTGAAACACCGAAAAGAAGAAGGGGTCGTGTTCGCAACCGTATTCGTGGTGATATGAGGGCAGCGACATTGATGAGGAAGCGTGAGTTGTGGCTGTATCGTGATAAGCGGATACTTGGACCAATACCCGGTATTTATGTTGGTGATTTGTTTCTTTTTAGGATGGAATTGTGTGTGGTTGGTTTGCATATGCAAATACAAGCTGGCATTGATTATTTACCTAAGAGTAAGTCTCCCAATGGCGAGCCAATTGCCACTAGTGTGATTGTCTCTGGTGGTTATGAGGATAATATGGAATTGGATAACGGTGATGTTATAATCTACACTGGCCATGGAGGACAGAAGAAGAATTCCTCGAGGCAAATTTGTGATCAAAAATTGGATGGTGGAAACCTTGCTTTGGAAAGGAGTATGCATCATGGCATTGAGGTTAGGGTGATTCGCGGGATGAAGTATGAAGGGAGTGCGTCTGGTTCTGGTATGGTATATATTTATGATGGACTATATAGGATTGTTGATTTTTGGTTTGATGTTGGAAAATCTGGCTTTGGAGTTTACAAGTATAAGCTTTTGAGAACCGAGGGGCAAGCTAAGTTGGGTAGTGTTGTTCTCAAAGAAGCTAGAGATATTAAGAAAAGTGGGTTGGATTTTAAGCCTATGTATTGTCTTTCAGTTGATATTTCTAACACTAGGGAGAGTATTCCGGTTAGGCTTTTTAATGACATAGATGACAATCAAGAACCACTTTATTATGAGTATCTTCAAAATACTAGTTTTCCGTTGTGTATGTTTCATCAGAGTGAGAAAGCTACAGGTTGCCAGTGTGTGGAAGCTTGTACTTATGGTTGCTTTTGCTCTATGAAGAATGGAGGAGAGTTTCCTTATAATCTACAGGGTTTGCTTGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGTTCTTGTCCTCCCAATTGTCGGAATCGTGTTGCACAAAAGGGGCTCAAATTTAGGCTGGAAGTGTTTAGGTCTACTCAGACGGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAGGCCGGAGCTTTTATCTGCGAGTATACAGGGGTTGTATTGACTCCAGAGCAAGCACAAATTTTAACAATGAATGGCGACTCGTTGATATATCCTAATTGGTTTTCAGATAGATGGGCAGAATGGGGGGATTTATCTCAGATATACACTAATTATGAGCGCCCATCATATCCATCAATTCCTCCGTTAGATTTTTCTCTGGATGTGTCAACAATGAGAAATGTTGCTTGCTATGTGAGCCATAGTTCGAGTCCAAATGTATTTGCTCAGTATGTTATGTATGATCACAACAATGTGAGGTTCCCTCGCATTATGCTATATGCATCGGAGAATATCCCTCCAATGAGAGAGCTGAGCATTGATTATGGCGTAGCGGATGAGTTGACCGACAAACTCGCCATATGCATGTGA 1887 0.4229 MKPMHSQSFENKDQALVVIPERQESNSQVFVVRNMANRVMQLVRMSDLTVKNQINSRELIRKTRLVYDSLRAVVSIEEEEKRIAVERRMTAEVAVMEEEMRLMEERRLAEERSLVDEVALMEVEMRVGEARIVEGAARVDVETPKRRRGRVRNRIRGDMRAATLMRKRELWLYRDKRILGPIPGIYVGDLFLFRMELCVVGLHMQIQAGIDYLPKSKSPNGEPIATSVIVSGGYEDNMELDNGDVIIYTGHGGQKKNSSRQICDQKLDGGNLALERSMHHGIEVRVIRGMKYEGSASGSGMVYIYDGLYRIVDFWFDVGKSGFGVYKYKLLRTEGQAKLGSVVLKEARDIKKSGLDFKPMYCLSVDISNTRESIPVRLFNDIDDNQEPLYYEYLQNTSFPLCMFHQSEKATGCQCVEACTYGCFCSMKNGGEFPYNLQGLLVRGKPLIFECGPFCSCPPNCRNRVAQKGLKFRLEVFRSTQTGWGVRSLDLIQAGAFICEYTGVVLTPEQAQILTMNGDSLIYPNWFSDRWAEWGDLSQIYTNYERPSYPSIPPLDFSLDVSTMRNVACYVSHSSSPNVFAQYVMYDHNNVRFPRIMLYASENIPPMRELSIDYGVADELTDKLAICM* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4495 628 SUPERFAMILY PUA domain-like 161 345 IPR015947 -
Tpr4g4495 628 Gene3D - 177 340 IPR036987 -
Tpr4g4495 628 Gene3D SET domain 341 628 IPR046341 -
Tpr4g4495 628 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 14 625 - -
Tpr4g4495 628 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 625 - -
Tpr4g4495 628 Pfam SET domain 483 615 IPR001214 GO:0005515
Tpr4g4495 628 SMART G9a_1 175 336 IPR003105 -
Tpr4g4495 628 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 30 627 IPR025794 GO:0016571
Tpr4g4495 628 Pfam SAD/SRA domain 179 336 IPR003105 -
Tpr4g4495 628 SMART preset_2 364 456 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr4g4495 628 ProSiteProfiles SET domain profile. 472 615 IPR001214 GO:0005515
Tpr4g4495 628 ProSiteProfiles Pre-SET domain profile. 411 469 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr4g4495 628 Coils Coil 86 106 - -
Tpr4g4495 628 Pfam Pre-SET motif 367 464 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr4g4495 628 SMART set_7 472 621 IPR001214 GO:0005515
Tpr4g4495 628 ProSiteProfiles YDG domain profile. 180 332 IPR003105 -
Tpr4g4495 628 SUPERFAMILY SET domain 357 616 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4495 Tpr-Chr4 52949045 52951836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4495 156 617 Su(var)3-9 homologs AT5G04940 39.875 2.53e-100 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr4g4495 SAD_SRA 1.4e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4495 K11420 - aip:107626851 799.66