Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4494 ATGGATTCTTTCTTAACCCTTGAAACCCCTTCTCCATCTCCTACACCTTCTCATCCTATTAATGTTCCTAATTTTGCATTTTCTCATCAAATCCCTAATATTTTACCCCCAAATTCATCAACCACCTTCATTTCACCACCAACCACCGCCATTTCCGCCGGACAACCGCTTCAGACATTACTTGTTCCAAAGCCGGAACCTTTTGATGATTTCTTTGCGACCCAAGATACTCAACAACAACCCTTTTACTCTCCTGGTTCTGGACAAAATGAACAATCTGACCTATACAATGAATTCTACCGTGTTTCTCAGCTATTCAATTCTACTTTCGGTAAATCCTTTTACCCTTCTCTCGGAATCGATGATTCCAATAATGTTGTTTCTGTTGAGAATATGGTCAACGTTTGTAACCCTGACCTAAATCTGAACCCTAATCATGTTGTAGATTCTGTTGATTCTCAGTCGTACGAGATTGAGAATAATAATGATCGTTCTCTTGTCGTTGTTCCGGAGAGACAAGAGTCGAGTTCACAAGTTGCTGTTGCTGTCGTTAAAAAGAGGGCTAATCAGGTTATGGAGCTGGTGAGGGTGTCGGATCTGAGTGTTAAGGATCAGATAAATTTGAGGGAGTTGATGAGGAAGACGAGAATGGTTTATGATTCGTTGCGCGTGTTAGCGAGTATTGAGGAGGAGAAAAGGATGGCTGAGGAGAGGAGAAATGCTGCTGAAGTTGCTGTTGTGGAGGAGGAGAGGAGGTTGATTGAGGAGAGGAGGCTGGCTGAAGAGAGGAGATTGGTTGCTGAGGTTGCATTGATGGAAGCTGAGATGGGAGGTGGTGAAGAGAGGAATGTGGGGGTAGCTGCTGCAGGGGTGGAAGTGGAGACTCCGCGAAGAAGGGGTCGTGTTCGCAACCGTATTCGTGGTGATATGAGGGCAGCGGCATTGATGAGGAAGCGTGAGTTGTGGCTGTATCGTGATAAGCGGATAGTTGGACCGATACCTGGAGTTTATGTTGGTGATGTGTTTCTTTTTAGGATGGAGTTGTGTGTGGTTGGTTTGCATATGCAGATACAAGCTGGCATTGATTATCTGCCTAAGAGTAGGTGTTCCAATGGTGAGCCGATTGCTACAAGTGTTATTGTCTCGGGTGGTTATGAGGATGATATGGAATTGAATGACGGTGATGTTATAATCTACACTGGCCATGGAGGACAAGAGAAGAATTCCTCAAGGCAAATCTGTGATCAGAAATTGGTGGGCGGAAACCTTGCTTTGGAAAGGAGTATGCATTATGGCATTGAGGTTAGGGTTATCCGTGGGATGAAGTATGAAGGGAGTGCGTCCGGTTCTGGTAAGGTATATGTTTACGACGGACTATATAGAATTGTTGATTGTTGGTTTGATGTTGGAAAGTCTGGCTTTGGAGTTTATAAGTATAAGCTTATGAGAATTGAGGGGCAAGCTAAGTTGGGTAGTGCTGTTCTCAAAGAAGCTAGAGATATTAAGAAAAGTGGGTTAGATTTTAAGCCTATGTATTGTCTTTCTGTTGATATTTCTAACAATAGGGAGAGTGTTCCTGTTAGGCTTTTTAATGACATAGATGACAATCAAGAACCTCTTTTTTATGAGTATCTTCGGAATACTACTTTTCCACAGTTTGTGTTTCATCAGAGTGGGAAAGCTACTGGTTGCCAGTGTGTGGAAGCTTGTACTGATGGTTGCTTTTGCTCTATGAAGAATGGAGGAGAGTTTCCGTATAATCTACAGGGTTTGCTTGTGAGAGGGAAACCTTTGATTTTTGAATGTGGCCCTTTTTGTTCCTGTCCTCCTAATTGTCGGAATCGTGTTGCACAAAAGGGGCTCAAATTTAGGCTGGAGGTGTTTAGGTCTACTCAGACGGGTTGGGGAGTTAGGTCCTTGGACCTTATACAGGCTGGTGCTTTTATCTGCGAGTATACAGGGGTTGTTTTGACTCGTGAGCAGGCACAAATTTTAACAATGAATGGCGACTCCTTGATATATCCTAACCGGTTTTCAGATAGATGGGCAGAATGGGGGGATTTATCTCAGATATACACTGATTATGAGCGCCCATCTTATCCATCAGTTCCTCCGTTAGATTTTTCTCTGGATGTGTCAACAATGAGAAATGTTGCTTGCTATATGAGCCATAGTACGAGTCCAAATGTGTTTGTTCAGTATGTTCTATATGACCACAACAATCTCATGTTCCCTCACGTTATGCTATATGCAACAGAGAATATCCCTCCAATGAGAGAGCTGAGCGTTGATTATGGTTTAGCGGATGAGTGGACCGGAAAACTCTCCATATGTATGTAA 2340 0.4312 MDSFLTLETPSPSPTPSHPINVPNFAFSHQIPNILPPNSSTTFISPPTTAISAGQPLQTLLVPKPEPFDDFFATQDTQQQPFYSPGSGQNEQSDLYNEFYRVSQLFNSTFGKSFYPSLGIDDSNNVVSVENMVNVCNPDLNLNPNHVVDSVDSQSYEIENNNDRSLVVVPERQESSSQVAVAVVKKRANQVMELVRVSDLSVKDQINLRELMRKTRMVYDSLRVLASIEEEKRMAEERRNAAEVAVVEEERRLIEERRLAEERRLVAEVALMEAEMGGGEERNVGVAAAGVEVETPRRRGRVRNRIRGDMRAAALMRKRELWLYRDKRIVGPIPGVYVGDVFLFRMELCVVGLHMQIQAGIDYLPKSRCSNGEPIATSVIVSGGYEDDMELNDGDVIIYTGHGGQEKNSSRQICDQKLVGGNLALERSMHYGIEVRVIRGMKYEGSASGSGKVYVYDGLYRIVDCWFDVGKSGFGVYKYKLMRIEGQAKLGSAVLKEARDIKKSGLDFKPMYCLSVDISNNRESVPVRLFNDIDDNQEPLFYEYLRNTTFPQFVFHQSGKATGCQCVEACTDGCFCSMKNGGEFPYNLQGLLVRGKPLIFECGPFCSCPPNCRNRVAQKGLKFRLEVFRSTQTGWGVRSLDLIQAGAFICEYTGVVLTREQAQILTMNGDSLIYPNRFSDRWAEWGDLSQIYTDYERPSYPSVPPLDFSLDVSTMRNVACYMSHSTSPNVFVQYVLYDHNNLMFPHVMLYATENIPPMRELSVDYGLADEWTGKLSICM* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4494 779 Pfam SAD/SRA domain 330 487 IPR003105 -
Tpr4g4494 779 Coils Coil 225 252 - -
Tpr4g4494 779 Gene3D - 328 491 IPR036987 -
Tpr4g4494 779 Pfam SET domain 634 766 IPR001214 GO:0005515
Tpr4g4494 779 SUPERFAMILY PUA domain-like 312 495 IPR015947 -
Tpr4g4494 779 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 57 776 - -
Tpr4g4494 779 Gene3D SET domain 492 779 IPR046341 -
Tpr4g4494 779 SMART set_7 623 772 IPR001214 GO:0005515
Tpr4g4494 779 SMART G9a_1 326 487 IPR003105 -
Tpr4g4494 779 Pfam Pre-SET motif 518 615 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr4g4494 779 ProSiteProfiles Pre-SET domain profile. 562 620 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tpr4g4494 779 ProSiteProfiles SET domain profile. 623 766 IPR001214 GO:0005515
Tpr4g4494 779 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 57 776 - -
Tpr4g4494 779 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 123 778 IPR025794 GO:0016571
Tpr4g4494 779 SUPERFAMILY SET domain 508 778 IPR046341 -
Tpr4g4494 779 ProSiteProfiles YDG domain profile. 331 483 IPR003105 -
Tpr4g4494 779 SMART preset_2 515 607 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4494 Tpr-Chr4 52940900 52945052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4494 307 768 Su(var)3-9 homologs AT5G04940 40.471 1.02e-100 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr4g4494 SAD_SRA 8.5e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4494 K11420 - gmx:100785015 880.552