Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4492 ATGGCTCGTTCAGTCCATTTGGTTTCCACTATCTTTGTCTTTCTTCTTCTTCTTCTTGTGGCCATCGAGATGGGGCCAATTATGGTGGCAGAGGCAAGGATATGTGAGTCACCAAGTCATGCCTTCAAAGGAGTATGCATGAGTGACACAAATTGTGCTAGTGTGTGCCTAACTGAGGGTTTCTCTGGAGGACACTGTGTAGGCCTCCGTCGTAGGTGTTTTTGCACTAAACCTTGTTAA 240 0.4625 MARSVHLVSTIFVFLLLLLVAIEMGPIMVAEARICESPSHAFKGVCMSDTNCASVCLTEGFSGGHCVGLRRRCFCTKPC* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4492 79 SMART gth_4 34 79 IPR003614 GO:0006952
Tpr4g4492 79 SUPERFAMILY Scorpion toxin-like 33 79 IPR036574 -
Tpr4g4492 79 ProSitePatterns Gamma-thionins family signature. 33 56 IPR008176 GO:0006952
Tpr4g4492 79 Gene3D - 32 79 IPR036574 -
Tpr4g4492 79 PRINTS Purothionin signature 34 49 IPR008176 GO:0006952
Tpr4g4492 79 PRINTS Purothionin signature 64 78 IPR008176 GO:0006952
Tpr4g4492 79 PANTHER DEFENSIN-LIKE PROTEIN 1 1 79 - -
Tpr4g4492 79 Pfam Gamma-thionin family 33 79 - -
Tpr4g4492 79 PANTHER DEFENSIN-LIKE PROTEIN P322 1 79 - -
Tpr4g4492 79 CDD Knot1 44 76 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4492 Tpr-Chr4 52900880 52901406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4492 1 79 Plant Defensins Gene Families AT2G02120 55.696 1.99e-25 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4492 - - gsj:114420878 116.316