Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4479 ATGAATTGCACACGGTTGTTTTTTAACCCAAGTTGTCCGGAAAGCATAGTCTTGAGGGAAAGTCTGCCTGACACACTTGAGAGTCCTTCTCCAATGACTCTTACTCAAATAAGTGTTGAACCACCAGTTAGACCAATTGATGAGTTTATATTCAATACCCCTAGAATGACTTTGCAAGGACTTAAAGATGCAACAACAGAAACACTTGGTGTTGTATGTGCAACTGTCAAAAGGATTTTGAATCCAGATTGCTTCTGGTACACTGCGTGTGTCTGTAACAAATTTGTGATTCCAGACTTTAACATGTTCTTTTGCGACAAATGCAATAAGCATGTCTTGAAAGTTTTCCCAAGATATTGTATGAAGGTTAGAGTTATGGATCACACAGATTCTGCCTCATTAGTGATATTTGACAGAGAGGCAAGTTCTTTGTTCAACATGAGTTGTGCTGATATGTTAGAGACTAATCAAAGGAATGTTGGGCCAAAAGTGGTGCCCCCTGAAATTGTGGGCTTGGTTGAAAAAACATGGTTGTTTAAAGTAGAGACTAAACCAGCTAGGAATCCTAGATTTGAGCAAACCTTTAAGGTCAGAAAAATATGCACCGACAGTTCCATAATCCAAATATTCAGGGACAGGTGGGATAGGGAGGAAGATTCAATTTCCAAACTGAACAATGAGGTTGGTTCTCTAAGTACTCTGTTGGGTAAAGGAAAAGATATTTTAATCTGCGGTTCTACCAATGTCTTATCCGAGGATTTACTCTCCTTGACTGGAAGTAGTAGCAAATCATGTGGAAAAGTTGTTGATTGTGATTCCACTCCTGGAGATTTTACTCAAGATTTGATGAACAAGTTTACTGATACTGTTGTGAACCTTGCATCTGATTCTGATGGTAGTTTTGAAAAGAAGCTGATTCCTGCCAAGGATTAA 933 0.388 MNCTRLFFNPSCPESIVLRESLPDTLESPSPMTLTQISVEPPVRPIDEFIFNTPRMTLQGLKDATTETLGVVCATVKRILNPDCFWYTACVCNKFVIPDFNMFFCDKCNKHVLKVFPRYCMKVRVMDHTDSASLVIFDREASSLFNMSCADMLETNQRNVGPKVVPPEIVGLVEKTWLFKVETKPARNPRFEQTFKVRKICTDSSIIQIFRDRWDREEDSISKLNNEVGSLSTLLGKGKDILICGSTNVLSEDLLSLTGSSSKSCGKVVDCDSTPGDFTQDLMNKFTDTVVNLASDSDGSFEKKLIPAKD* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4479 310 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 2 153 - -
Tpr4g4479 310 SUPERFAMILY Nucleic acid-binding proteins 56 186 IPR012340 -
Tpr4g4479 310 Pfam Replication factor-A C terminal domain 74 182 IPR013955 -
Tpr4g4479 310 PANTHER REPLICATION FACTOR A 1, RFA1 2 153 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr4g4479 310 CDD RPA1_DBD_C 61 184 IPR013955 -
Tpr4g4479 310 Gene3D - 51 207 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4479 Tpr-Chr4 52769486 52772519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4479 1 149 Core DNA Replication Machinery Family AT2G06510 26.115 2.68e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4479 - - mtr:MTR_4g036240 298.901