Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4475 ATGGAGAAAAAGGAATCATCATCTAAGTATGATCAACATGAAGATGCTACTAAAAAAGCTACAAAATTTGATGGAGATTCCGCGACAGTTTCGTCTAATTCAGGAAAAAGTGAAGAACCTGTGAACAAATGGATGGCATTTGCTAACAAATCAGATGAAAACTCGACAACAACGAAGGCTCCTACTGGTCACGACGATCAAATTATAACCGAAGCAGCTATAGCCGAGAGAGCTGCGGAATGGGGACTAGTTGTGAACTCAGGCAATTTGAAAGCAGCAATTGAGACAACAAGTTCTTCATTAGATGGTGATAGGAGTAAAGGCATGTCAGATAGGTTTGCTGATTCGGCAAGGGTTTCCGGAGATTCGAATTATGGTTCGGAGGCTAAATTATCAGGGTTGTTTCCAAGAGTTTCGCAAGAGTTGAAAGAAGCATTGGCTACACTTCAACAAACATTTGTTGTCTCTGATGCAACTAAACCTGATTGTCCTATCTTGTATGCTAGCAGTGGTTTTTTTACTATGACCGGTTACTCTTCCAAAGAGGTTATTGGAAGGAATTGCCGATTTCTTCAAGGACCTGAAACTGACATGAATGAAGTAGCTAAAATTCGGGATGCAACGAAGAATGGGAGGAGTTATTGCGGCAGGCTTTTAAACTACAAGAAAAATGGAACACCATTTTGGAATCTTCTCACTGTCACTCCAATCAAAGATGATCGTGGCAATACCATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGTGTGAATGAGAAGGAACTAAGACCAAATGGATTACCAAAATCATTAATTCGCTACGACGCTCGTCAAAAGGAGAAAGCTATGGGATCAATCACTGAGGTTGTTCAAACTGTTAAGGATCCAAAATCGATAATGCGCGGTATGATTGATGAAAATGCCGCCACCAAGCATGAAGAGCTAGAGAAAATAAATTATGATTTTGCTTTGCCAAAGTCTGCCGAACCTGAGAGTACACCACCTAGTAATCATATGTCGCGCTTTAGTTCTTACGAGGAAAGGAACAACAAGTCATCAAGAAAATCAGGAATAACTTCTTCCAAAGGTGTTAAAGGGAAATCAATGAGTGCTGTAGGGAGAGACAAGGAAAAAATTATTATTGAACCTGAAGTTTTGATGACAAAGGAAATAGAATGGTCCAAATGGGAGGCAAGAGAGAGAGATATAAGGCAAGGAATTGATCTAGCAACCACATTGGAGAGAATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATTGTCCAATTATATTTGCATCAGATAGTTTTCTCGAGCTTACAGAATACACGCGAGAAGAAATTTTGGGTCGAAACTGTCGGTTTCTTCAAGGACCAGAAACAGACCAGACAACTGTCTCTAGGATTCGAGATGCTATCAGAGATCAGAGGGAAATCACAGTTCAGTTGATCAACTATACTAAGAGTGGAAAAAAATTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGATGGAAGTGACCATTTAGAGCCTTTAAGAAACCGTCTGTCTGAAGGTTCTGAGCAACAAAGTGCTAAGTTGGTAAAAGCCACTGCAGAAAATGTTGATGAAGCTGTTAGAGAACTTCCTGATGCCAATTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTTTCTCCAAGACCACACAAAAGGGACAATCCTTCTTGGGTAGCTATTCAAAAGATAACTGCAAGAGGCGAAAAAATTGGCCTTCACCATTTTTCTCCAATAAGGCCCTTGGGTTGTGGAGATACTGGCAGTGTTCATTTAGTGGAACTCCGAGGTACTGGCGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGTTAAATCGTAATAAGGTTCATCGAGCATGTATTGAAAGAGAGATTATATCATTACTTGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACAGAGACACATGTATGTTTGATTACTGACTTCTGCCCTGGGGGTGAGTTGTTCGCAGTACTCGACAGGCAACCCATGAAGTTTTTAAAAGAAGATTCAGCAAGATTCTATGCAGCAGAGGTTGTTATTGGTTTGGAATATCTCCATTGTTTGGGTATAATTTATCGTGACTTAAAGCCTGAAAATCTCTTACTTCAGAAGGATGGCCATATTGTATTAACTGATTTTGATCTATCATTTATTACATCATGTAAACCTCAGGTTGTGAAGCAGTCATTACCTAGTAATAGAAGAAGATCTCGAAGTCAGCCACCACCATTATTTGTTGCAGAGCCAATTACACAATCAAACTCATTTGTTGGAACTGAAGAGTATATTGCCCCGGAAATCATAACTGGAGCGAGGCATACAAGTGCTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTATACGGCCGTACACCATTTAGAGGAAAGAATAGACAGAAGACATTTTCCAATATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCTAGGCAGTTGATTAATGCACTATTGCAAAGAGATCCAGCCAGTCGTCTAGGTTCAACTACAGGAACCAATGATATCAAACAACATCCTTTTTTCCGTGGAATCAACTGGCCTTTAATCCGCAACATGAGTCCACCCCCTTTAGATGTTCCTCTTCAATTTATAGGAATAGATCCAACGGCAAAGGACAAGAAATGGGAAGATGATGGTGTGCTAAATAGCTCCATTGATTTGGATATTTTTTGA 2841 0.3999 MEKKESSSKYDQHEDATKKATKFDGDSATVSSNSGKSEEPVNKWMAFANKSDENSTTTKAPTGHDDQIITEAAIAERAAEWGLVVNSGNLKAAIETTSSSLDGDRSKGMSDRFADSARVSGDSNYGSEAKLSGLFPRVSQELKEALATLQQTFVVSDATKPDCPILYASSGFFTMTGYSSKEVIGRNCRFLQGPETDMNEVAKIRDATKNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDRGNTIKFIGMQVEVSKYTEGVNEKELRPNGLPKSLIRYDARQKEKAMGSITEVVQTVKDPKSIMRGMIDENAATKHEELEKINYDFALPKSAEPESTPPSNHMSRFSSYEERNNKSSRKSGITSSKGVKGKSMSAVGRDKEKIIIEPEVLMTKEIEWSKWEARERDIRQGIDLATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQTTVSRIRDAIRDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEGSEQQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVSPRPHKRDNPSWVAIQKITARGEKIGLHHFSPIRPLGCGDTGSVHLVELRGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPTLYTSFQTETHVCLITDFCPGGELFAVLDRQPMKFLKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENLLLQKDGHIVLTDFDLSFITSCKPQVVKQSLPSNRRRSRSQPPPLFVAEPITQSNSFVGTEEYIAPEIITGARHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPASRLGSTTGTNDIKQHPFFRGINWPLIRNMSPPPLDVPLQFIGIDPTAKDKKWEDDGVLNSSIDLDIF* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4475 946 SMART pac_2 215 257 IPR001610 -
Tpr4g4475 946 SMART pac_2 486 528 IPR001610 -
Tpr4g4475 946 PANTHER BNAA02G07840D PROTEIN 94 945 - -
Tpr4g4475 946 SUPERFAMILY Protein kinase-like (PK-like) 585 924 IPR011009 -
Tpr4g4475 946 ProSiteProfiles PAS repeat profile. 138 211 IPR000014 -
Tpr4g4475 946 PANTHER FLIPPASE KINASE 1-RELATED 94 945 - -
Tpr4g4475 946 SMART serkin_6 610 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4475 946 Gene3D PAS domain 399 562 - -
Tpr4g4475 946 MobiDBLite consensus disorder prediction 1 22 - -
Tpr4g4475 946 SUPERFAMILY PYP-like sensor domain (PAS domain) 159 251 IPR035965 -
Tpr4g4475 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 731 743 IPR008271 GO:0004672|GO:0006468
Tpr4g4475 946 SMART pas_2 140 209 IPR000014 -
Tpr4g4475 946 SMART pas_2 411 480 IPR000014 -
Tpr4g4475 946 ProSiteProfiles PAS repeat profile. 409 482 IPR000014 -
Tpr4g4475 946 MobiDBLite consensus disorder prediction 48 63 - -
Tpr4g4475 946 CDD PAS 436 524 IPR000014 -
Tpr4g4475 946 MobiDBLite consensus disorder prediction 1 63 - -
Tpr4g4475 946 ProSiteProfiles PAC domain profile. 483 537 IPR000700 -
Tpr4g4475 946 Gene3D PAS domain 152 324 - -
Tpr4g4475 946 CDD STKc_phototropin_like 608 920 - -
Tpr4g4475 946 ProSiteProfiles PAC domain profile. 212 266 IPR000700 -
Tpr4g4475 946 Pfam PAS domain 159 255 IPR000014 -
Tpr4g4475 946 Pfam PAS domain 432 524 IPR000014 -
Tpr4g4475 946 MobiDBLite consensus disorder prediction 330 376 - -
Tpr4g4475 946 Gene3D Phosphorylase Kinase; domain 1 609 693 - -
Tpr4g4475 946 Gene3D Transferase(Phosphotransferase) domain 1 694 911 - -
Tpr4g4475 946 ProSitePatterns Protein kinases ATP-binding region signature. 616 639 IPR017441 GO:0005524
Tpr4g4475 946 CDD PAS 165 254 IPR000014 -
Tpr4g4475 946 MobiDBLite consensus disorder prediction 24 39 - -
Tpr4g4475 946 ProSiteProfiles Protein kinase domain profile. 610 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr4g4475 946 SUPERFAMILY PYP-like sensor domain (PAS domain) 428 524 IPR035965 -
Tpr4g4475 946 TIGRFAM sensory_box: PAS domain S-box protein 164 255 IPR000014 -
Tpr4g4475 946 TIGRFAM sensory_box: PAS domain S-box protein 436 524 IPR000014 -
Tpr4g4475 946 Pfam Protein kinase domain 613 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4475 Tpr-Chr4 52666201 52681228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4475 72 945 AGC Kinase Gene Family AT5G58140 73.636 0.0 1295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Tpr4g4475 Pkinase 2.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4475 K20715 - gmx:100804783 1503.42