Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4474 ATGGCGATGCTGTTAAGAAAACTCCGTGATTCAGCATCATCGTTAAAGCAACGATCCACCACTTCATCTTCATCTTCATCATCATCATCATCACGCTCTCATCCTTCTCCTCCTCTTCCTCTTCCTTTAGGTTCATTCGATTCACTCCCTACTGAATTACTCCTCAAAATCATACGACTATTGGACCCTAAACAAGTCGCTAAACTATGCATCGTTTGCAAATCATGGCGATCTCTCGTCTCCGATAATCAACTCTGGGCTTATTTTCTTCAAACATATCAACCTCTACACTTTGATTCTATTCTCTTCTCAGAAATTAACTTAACTTCTGGTTATCCTCTTCCGATTTTTGTTAATCAGACGCCACGCGTGTCGTTTAAGCAGGTTTATGGCCAACGGGAGCGAGTTCCTCCTGCTGTTATCATCGACGGTGGTTCTGGCTATTGCAAATTTGGTTGGAACAAAGACGAGCGTCCATTGGGGCGAACAGCTACCTTTTTGGAATTTGGTAACGTGGAAACGCCAATATATACTAGGCTTCGGCATTTTTTTGGGACTGTATATGGCAGGATGAAGGTGAAACCAAGTTCTCAACCTGTTGTTGTTTCTTTACCATTATGCCACTATGATGATACCAATTCAGCCAAAGCATCGAGACATCAGCTTAAAGAAGCAATATGCTCTGCGTTGTTTGACATGAATGTTCCTTCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTCTTTGCTGCAAATCAAACTTCTGGAATAGTTGTAAATATAGGATTTCAAGTCACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGATTGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACAGGATTTCTTAGAGAGCAAATGCAACAAAGCAATATATATTTTGAATCTTTGTACACTGTTCGCACACTAAAAGAGAAGCTATGCTATGTTGCCTATGACTATGAAGCTGAGCTATTGAAAGATACACATGCATCATTTGAAGCTGTTGAAGGGAAGTTTACACTCTCTAAAGAGAGGTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGATGCGAGCAATGAGTTTGCACCATGCCATAGCTCTCTGTATGGACCATTGTCATTCTGCAGAATTAGCAGGCGGCAGTGATTGGTTTAAGACCATTGTCTTATCCGGAGGGTCTGCATGTTTACCAGGTTTAGCAGAAAGGTTAGAGAAGGAACTTCATTCGTTACGTCCTCCCTATATGTCGAATGGAATCAGAGTCATCCCTCCTCCACATGGTGCGGATACTGCATGGTTTGGTGCAAAGCTTATTGGCAGTTTGAGCACGTTTCCGGCCCCCTGGTGTACAACAAAGAAGCAGTTCCGTCAGAATAAACTCAACCGAATCTGGTGA 1428 0.4258 MAMLLRKLRDSASSLKQRSTTSSSSSSSSSSRSHPSPPLPLPLGSFDSLPTELLLKIIRLLDPKQVAKLCIVCKSWRSLVSDNQLWAYFLQTYQPLHFDSILFSEINLTSGYPLPIFVNQTPRVSFKQVYGQRERVPPAVIIDGGSGYCKFGWNKDERPLGRTATFLEFGNVETPIYTRLRHFFGTVYGRMKVKPSSQPVVVSLPLCHYDDTNSAKASRHQLKEAICSALFDMNVPSVCALNQATLALFAANQTSGIVVNIGFQVTSVVPILNGKVMRKIGVEVVGLGALKLTGFLREQMQQSNIYFESLYTVRTLKEKLCYVAYDYEAELLKDTHASFEAVEGKFTLSKERFQTGEILFQPRLAGMRAMSLHHAIALCMDHCHSAELAGGSDWFKTIVLSGGSACLPGLAERLEKELHSLRPPYMSNGIRVIPPPHGADTAWFGAKLIGSLSTFPAPWCTTKKQFRQNKLNRIW* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4474 475 SUPERFAMILY F-box domain 41 106 IPR036047 GO:0005515
Tpr4g4474 475 Gene3D Actin; Chain A, domain 4 287 369 - -
Tpr4g4474 475 Gene3D - 180 467 - -
Tpr4g4474 475 SUPERFAMILY Actin-like ATPase domain 138 259 IPR043129 -
Tpr4g4474 475 MobiDBLite consensus disorder prediction 1 38 - -
Tpr4g4474 475 SMART fbox_2 49 89 IPR001810 GO:0005515
Tpr4g4474 475 Gene3D - 42 137 - -
Tpr4g4474 475 Gene3D - 244 441 - -
Tpr4g4474 475 CDD NBD_sugar-kinase_HSP70_actin 140 284 - -
Tpr4g4474 475 MobiDBLite consensus disorder prediction 14 34 - -
Tpr4g4474 475 SUPERFAMILY Actin-like ATPase domain 254 463 IPR043129 -
Tpr4g4474 475 SMART actin_3 137 475 IPR004000 -
Tpr4g4474 475 Pfam Actin 218 462 IPR004000 -
Tpr4g4474 475 Pfam F-box-like 47 87 IPR001810 GO:0005515
Tpr4g4474 475 PANTHER ACTIN-RELATED PROTEIN 8 98 470 - -
Tpr4g4474 475 ProSiteProfiles F-box domain profile. 43 89 IPR001810 GO:0005515
Tpr4g4474 475 PANTHER ACTIN 98 470 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4474 Tpr-Chr4 52640231 52648698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4474 186 469 Cytoskeleton Gene Families AT5G09810 32.770 5.74e-38 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4474 K16616 - gmx:100804254 704.516