Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4472 ATGAGTTCTTTCTCCATTACGAGGAAAAAGACACCGTTTCAGAAGCATAGAGAAGAGGAGGAAGCAAAGAAAAAGAGAGCGGAAGATGAGACTGCTCGCCTGTATGCTGAATTTGTAGAGTCGTTTCAAGGGGATAACGCTCCTGGGTCAAAGACTTTTGTTCGGGGAGGAACAATTAATCCCAATGATAAATTGAAAGATGATTCTGAAGGTATGTGCCATCTTTTATACCGCCTCCATTGGCAACCAAGGGGAAAGAACCTGAAAGAAAAGTCAAAAGAGGAAGAAAAGCCAAAGGAAAAAGAGAAAGGAAAATCAAGGAACATTGATCATTTTATGGAGGAGTTAAAGCAAGAGCAAGAGATGAGGGAGAGACGAAATCAAGACCGTGAACAATGGCGTGATGGGCGTCCTGGAGAGCATTCTATTTCCAGTCGTTTTGATGAACTGCCAGACGATTTTGATCCTAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTTTACGTTGGAAATCTCTCACCCCAGGTTGATGAAAATTTTCTTTTGCGCACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTCGAACAGAGGAGGAGCGAAGGCGACAAAGAAACTGTGGTTTTGTTGCATTCATGAACAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGGGTTGTGGTTTATGAGTACGAATTGAAAATTGGATGGGGAAAGTCTGTTGCCCTCCCATCACAAGCATTACCTGCACCTCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAACACTGTTATCTTGTCTGGCCCATCAGGTCCACCAGTAACATCAGTACCTAGTCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATCTAAGGCATCTAATTGATACAATGGCTTTGTATGTCTTGGACGGAGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGGCGTGGCAACCCTCTTTTCAATTTTTTGTTTGTTCTTGGCTCAAAGGAGCATACCTACTATGTTTGGAGACTCTATTCATTTGCTCAGGGTGATACTCTTCAAAGATGGCGAACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATTCCTCCCGCATTACCAATAGCCAAAAGTCCGGAACATGACAAAGAATCTGGCTCCACACATGCTGCTGGAAGAAGCAGGCGTGTAGAACCTGAAAGAACGCTAACTGATGCACAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAGAGGAGTCAGATAAAGGGGGCTATGGGATTTTCTTTGGATAACGCCGATGCAGCTGGCGAGATAGTTGAAGTGTTAACGGAATCCTTGACACTTAAAGAAACCCCCATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCGGCATATCGCACCAAGTTTGAAGCAACGTTACCTGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGGCGTATTACTGCCGAAGCCCTTAAGGAACGAGTGCTGAAAGTTTTGCAAGTGTGGGCCGATTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTAAGAGCTACTTTCCTTAGACCTGGGAACTCTGGTGTCATACCGTTCCACTCCATATGTGGTGATGCACCTGAGATTGAGCAGAAGATCACTTCTGAAGATGCTGTTGTTGGTAGCAAGACCGACCAAGATGCTGCATTGGCAATGGGTCGAGGAGCTGCAACGAGAGAGCTAATGAGTCTTCCTCTTGCTGAGCTGGAAAGACGGTGTCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTATGAACTGGATGATGAATTGAAATATCCCCTCAACCAACCAAGTACAGGGAAATATTCAAGTAGTCGGCGAGAAACAAGTGCAGAGCCTGAACCAATGGGGTTGTCTGGATTGAATCAATATGGAGATGAAGATATGCAAGGTAAAGGTTTTGCACCTTTAGCGCCAACCCTTGCTATTCCACAGCCTGAACTTAAAGCCTTCACAAAAAAAGAGAAGAATGATCTAGTTTTGCCGGCCTCTAAATGGGCTCGGGAGGACGATGAGAGTGATGATGAGCAAGGGAAAGGTGGAAAAAATCTTGGGTTAAGCTACTCATCTTCTGGTAGTGAGAATGTGGCCGATGGCCTTACTAAAGCTGATGAATCAGAGGCTGCTGCTGATTCAAGTTTTCCAGCTCATGCTGACAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCTTGGAGGTTGCTTTAATTGAATATCGCGAGTCTCTTGAAGAAAGGGGAATTAAAAACTCGGAGGAAATCGAGAAGAAAGTTTTGATGCACCGGAAACGGCTGCAAGTGGAGTACGGGTTATCAGATTCTAGTGAAGATGGTCAAGGCAGCAGGAGAACATCTTCTGAGAGAAGGGATAGGCATGATATCTCAAGGAAACGGCACCGCAGCCATAGTCGAAGTCGTAGTCCACATCACAAACCATCAAGCAAAGACAGAGATAGAGAACGTGATTTAGAAAGGGAACGAGACAGAAAAAGAGATAGAAGCTATGATTTCGACAGTGATAGAGGAAGAGACCGGCTCAGGGAGAAGAGTGGAAGCAGGGAGAGAGATGATCATGATAAGGATAGAGGCCGGGACAGGGACAGAGACAGAGACAGGAGAAGACGCGCCAAATAA 2880 0.4448 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGMCHLLYRLHWQPRGKNLKEKSKEEEKPKEKEKGKSRNIDHFMEELKQEQEMRERRNQDREQWRDGRPGEHSISSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGNTVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVTPPEDEHLRHLIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPIAKSPEHDKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKGAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKITSEDAVVGSKTDQDAALAMGRGAATRELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYPLNQPSTGKYSSSRRETSAEPEPMGLSGLNQYGDEDMQGKGFAPLAPTLAIPQPELKAFTKKEKNDLVLPASKWAREDDESDDEQGKGGKNLGLSYSSSGSENVADGLTKADESEAAADSSFPAHADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNSEEIEKKVLMHRKRLQVEYGLSDSSEDGQGSRRTSSERRDRHDISRKRHRSHSRSRSPHHKPSSKDRDRERDLERERDRKRDRSYDFDSDRGRDRLREKSGSRERDDHDKDRGRDRDRDRDRRRRAK* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4472 959 ProSiteProfiles SURP motif repeat profile. 321 364 IPR000061 GO:0003723|GO:0006396
Tpr4g4472 959 MobiDBLite consensus disorder prediction 11 29 - -
Tpr4g4472 959 MobiDBLite consensus disorder prediction 893 959 - -
Tpr4g4472 959 CDD RRM_SR140 171 254 IPR035009 -
Tpr4g4472 959 ProSiteProfiles SAP motif profile. 623 657 IPR003034 -
Tpr4g4472 959 Coils Coil 804 824 - -
Tpr4g4472 959 MobiDBLite consensus disorder prediction 668 696 - -
Tpr4g4472 959 Gene3D - 803 854 - -
Tpr4g4472 959 MobiDBLite consensus disorder prediction 764 778 - -
Tpr4g4472 959 SUPERFAMILY ENTH/VHS domain 433 570 IPR008942 -
Tpr4g4472 959 MobiDBLite consensus disorder prediction 86 147 - -
Tpr4g4472 959 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 253 IPR000504 GO:0003723
Tpr4g4472 959 MobiDBLite consensus disorder prediction 743 760 - -
Tpr4g4472 959 Gene3D - 83 255 IPR012677 -
Tpr4g4472 959 Pfam cwf21 domain 804 848 IPR013170 -
Tpr4g4472 959 MobiDBLite consensus disorder prediction 849 959 - -
Tpr4g4472 959 SUPERFAMILY Surp module (SWAP domain) 294 376 IPR035967 GO:0003723|GO:0006396
Tpr4g4472 959 SMART cwf21_2 803 852 IPR013170 -
Tpr4g4472 959 Coils Coil 17 37 - -
Tpr4g4472 959 MobiDBLite consensus disorder prediction 403 427 - -
Tpr4g4472 959 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 246 IPR000504 GO:0003723
Tpr4g4472 959 MobiDBLite consensus disorder prediction 677 691 - -
Tpr4g4472 959 PANTHER RNA PROCESSING PROTEIN LD23810P 5 954 - -
Tpr4g4472 959 PANTHER - 5 954 - -
Tpr4g4472 959 MobiDBLite consensus disorder prediction 743 808 - -
Tpr4g4472 959 Pfam CID domain 436 564 IPR006569 -
Tpr4g4472 959 Gene3D - 429 575 IPR008942 -
Tpr4g4472 959 Gene3D Surp module 307 376 IPR035967 GO:0003723|GO:0006396
Tpr4g4472 959 ProSiteProfiles CID domain profile. 429 574 IPR006569 -
Tpr4g4472 959 SMART surpneu2 319 373 IPR000061 GO:0003723|GO:0006396
Tpr4g4472 959 SMART 558neu5 436 571 IPR006569 -
Tpr4g4472 959 SMART rrm1_1 173 249 IPR000504 GO:0003723
Tpr4g4472 959 SUPERFAMILY RNA-binding domain, RBD 165 260 IPR035979 GO:0003676
Tpr4g4472 959 MobiDBLite consensus disorder prediction 875 892 - -
Tpr4g4472 959 MobiDBLite consensus disorder prediction 45 66 - -
Tpr4g4472 959 Pfam Surp module 319 371 IPR000061 GO:0003723|GO:0006396
Tpr4g4472 959 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4472 169 249 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 1.92e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4472 K12842 - gmx:100776093 1527.69