Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4464 ATGACTAGGAAGAAGGTGAAACTTGGCTTTATCTGTGATGATTCAGCAAGGAAGGCAACCTATAAGAAAAGAAAGAAGGGCATTATGAAGAAGGTGAGTGAACTCACCATTCTTTGTGGTATTCCAGCATGTGCCATAATTTCAAATCCTTTTGATTCTAAAACAGAGGTGTGGCCAGATATAGCAGAAGCCAAGCAGATTATTGAGAGGTATCAAAATTCATCTGTGATTGATGGGGCAAAAAATGTGAACCAAGAGAGCTTCCTTTTGCAGAGGATTACTAAAGCTAGGGAGCAACTTCGAAAGCAAAAACACGACAATCATGAGAAGGAGCTGACCGTTCGTATGATTGGGTACATGAAAAACAAACAGTTGCCTGATGATTTATCTGTTTCAGATTTGAAACAATTTGATAAGCTAATTGACAAAAATCTGAAAGACCTTGATAACAAAATTGTTGAGCTCAATTCATTTGATTAA 480 0.3729 MTRKKVKLGFICDDSARKATYKKRKKGIMKKVSELTILCGIPACAIISNPFDSKTEVWPDIAEAKQIIERYQNSSVIDGAKNVNQESFLLQRITKAREQLRKQKHDNHEKELTVRMIGYMKNKQLPDDLSVSDLKQFDKLIDKNLKDLDNKIVELNSFD* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4464 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Tpr4g4464 159 PANTHER MADS BOX PROTEIN 2 155 - -
Tpr4g4464 159 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Tpr4g4464 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Tpr4g4464 159 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Tpr4g4464 159 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Tpr4g4464 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr4g4464 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr4g4464 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4464 Tpr-Chr4 52541274 52541798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4464 1 152 MADS-box Gene Family AT5G26630 43.137 1.22e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr4g4464 SRF-TF 2.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4464 - - gmx:100792290 198.364