Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4461 ATGGATCCTGGTCGCTATGCACTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTCCACGAGCCAAATTTTCGGGTCGGCGGCGCTTATGATGAAAGAAGGTTTATAGATGAAAGATATCCAAGGGATGCTGTATACCAGAGAAATAATTTCCACCGTGATGTTTTGGAAAGGGAAGCCTATTTGCCACCAGGACCTGCTGTTGGCCAATGGAGTCAATCCAAACGGAGGGGCTATGATGAAGATCATCCACTTGAAAGGGAATCTAGACGTTTTCAAAGGCCTTATCATGAACCATACAATCAAATGGATGGTTTCAGGGATCGGGAGATTGACATGTACCCGGAGTATGATAAGTTTCGAGATGGTTATACAAACATTGAAAACTACGGTGATCGAGGATATGAAAAACCTGCAAGGTTCGCAGGGCATGACCGCGACGATTATGAATACGATGATTATGGCCACAAGTCCCGTGTTTCGCATCATCGGAGGGAGGATAGCCATGACAGGGATTATGATCATTGTCGCCATAGTTATGATTCTGATTATGAAAAAGATAGCAGAAGAGATAGTAGTTGGAGGCGCCGTGAATCACGCGATCGAGAACGAGACAAGAGATGTCTTAGTCGGGAAAAGGATCCAAGTCCGCATAGGAAACATGAGCGTTCACGATCACGTTCACGATCCCATTCTCGATCCCGGTCCCACTCCTGTTCGCATTCTCACTCTCGTTCCCGTTCCCAATCTCGTGGATATGATGATCATCCAAAATCTAGGTCTCCTCGAGGTCGAAGCCATAGTCGAAGTTATCGGGAAGACAGCTATGCTGATAATCGATATGATAGAAGTGAAAGACGCAGGGACCGTGATGATAAACATCAGCGAGAGCATTATTCTGTGGCCCCTTCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCACTTCGTCATGTTCGTGTTATAAAGGAGAGAAGTTCTGGCATCTCTCGCGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCGGCACGAGGAATGATGGACAAACTAGGAGATGATGGTCTTGTTGTGGATGGTAGAAAGCTTTTCTTTGAATATAGTAAGCCAACTGGAGGTGCAGGTCCAGATGGAGCTTTGAAACCTGGTCATAGTCATAAGGGAATTACAATACCATCTGATTGGATGTGCACTATATGCAGCTACATCAATTTTGCAAGACGGACTTCCTGCTATCAGTGTAATGAACCACGCACTGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCATCATCCTTAGGAAAGAAAGGTCTGGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGTTATGAGTTTTCTAAACATGCTCCAATCAAGGATCTACGTCTTGTGAGAGACAAGTTTACTCATGTTTCAAGGGGATTTGCATTTGTACATTTTTATTCGGTAGAAGATGCTACCAAAGCTCTTGACTTAACAAATGGAACTGCCCTTGAGAAGAATGGTCAGATTCTAAGAGTAGCATATGCAAAAAGCATACTGGGTCCTGGATCAGGAGCGTCAGGAACTTCACAGTCAAGCAGTCTTGCAGCTGCAGCTATTGAGGCTGCAACATTTGCCCAACAGTATGATTCTGTCGGATGGGCTCCCAAAGAATACAATCCAGATGACAAACAATCTAATGGTCCAGAGCAGACTAGTACTGATGTTGGTGCACCACAATCTGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTACATCTGGGTTTTATTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCATACTCAGCAGTACATCCCATGCACCGATCAAAATCAGAATAAATCATCTAATAACGAGTCTGAACCTTCCAAGTCATCTGATGGTTTGAGCACTAAAAAGGTAGTGATTTCTGCACCAGCGACTATTGTTACTTCAAACGAGAAGCCAGCTTCACTGGCAGATGCTGTCCAGGCTGCTGCAGCTGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAAATCAAAGGAGATAAAACTTGCTTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTACTGACAATGTGGAAACAGAGAAGTCATGAGGGACAGGCTACTCGAGTGGCACTGGACGACAATCAGTTATCTGGTTCTGCTGACGATAGGCCATATTCTTCTGCACATTCTGCAAAGAATAAGTTAAAAAATGACACACCATCCAGGGAAATTAATGCGTCTAATCCGGGAAGTCACACAACTGCACAGGCTGCCACTATTGACTCTCAGGCACAGCCACGGCCTTTCAGCAATAGCCTTGGGGGCACTCTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATACTTCTTATTCTGGCTCTACGTCTGCCACACCATCTACGTCAGCTTCATCTTCAGCAAATGTTGAGGCGCAATCATTTGCTACTCCCTTCAAAACAGACGTCTCTTCCCTGGGTTCATATACACCATCTGTGTCTGTTGGAAGCGGAAGAAGAAGGTTTTCAGAAATGCCTCTTTCTGCTTCAACACATAAGGAACAGTCGCAAACAACCTACAGGGATCGGGCAGCTGAGAGAAGAAGTTTGTATGGCTCGTCATCTTCAGTTGGCAGTGATTTGGCTGACCTTGAAATTGGGGATTCAACTCGAGATTTTGCATCAAGAAGGGGTGATACAATGCCATTCCCTCCCGGAGTTGGTGGAGGACGCACGGTTGGAGATGTCAACCTCGATACTTTTGAGGTGATTACGGCAGATAAAGCGATTGATGAAAAGAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAGGAAGGCTTGGGACTAGGAAAAGATGGAAGTGGAATGATAGAGCCTGTTCAGACACAAGCCATGGAAAATAGAGCAGGGCTCGGAAGTCAGCAGAAAAAGTTGGACCCTAGCCTCGAGGTGCAGGCCAACGATAGCTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGCGAAATGTAA 3189 0.4484 MDPGRYALHQGWDNNSALEGYGAVHEPNFRVGGAYDERRFIDERYPRDAVYQRNNFHRDVLEREAYLPPGPAVGQWSQSKRRGYDEDHPLERESRRFQRPYHEPYNQMDGFRDREIDMYPEYDKFRDGYTNIENYGDRGYEKPARFAGHDRDDYEYDDYGHKSRVSHHRREDSHDRDYDHCRHSYDSDYEKDSRRDSSWRRRESRDRERDKRCLSREKDPSPHRKHERSRSRSRSHSRSRSHSCSHSHSRSRSQSRGYDDHPKSRSPRGRSHSRSYREDSYADNRYDRSERRRDRDDKHQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSVGAARGMMDKLGDDGLVVDGRKLFFEYSKPTGGAGPDGALKPGHSHKGITIPSDWMCTICSYINFARRTSCYQCNEPRTDDAPAADISLSNSSSLGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLTNGTALEKNGQILRVAYAKSILGPGSGASGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSNGPEQTSTDVGAPQSGFVWDEASGYYYDATSGFYYDGNTGLYYDGNNGIWYSYDHHTQQYIPCTDQNQNKSSNNESEPSKSSDGLSTKKVVISAPATIVTSNEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALDDNQLSGSADDRPYSSAHSAKNKLKNDTPSREINASNPGSHTTAQAATIDSQAQPRPFSNSLGGTLMGVIRGSGRGVVKSDTSYSGSTSATPSTSASSSANVEAQSFATPFKTDVSSLGSYTPSVSVGSGRRRFSEMPLSASTHKEQSQTTYRDRAAERRSLYGSSSSVGSDLADLEIGDSTRDFASRRGDTMPFPPGVGGGRTVGDVNLDTFEVITADKAIDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQANDSYKMLIHKKALARFREM* 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4461 1062 CDD RRM1_RRM2_RBM5_like 464 544 - -
Tpr4g4461 1062 MobiDBLite consensus disorder prediction 843 863 - -
Tpr4g4461 1062 SUPERFAMILY Ran binding protein zinc finger-like 408 441 IPR036443 -
Tpr4g4461 1062 MobiDBLite consensus disorder prediction 227 249 - -
Tpr4g4461 1062 MobiDBLite consensus disorder prediction 80 109 - -
Tpr4g4461 1062 MobiDBLite consensus disorder prediction 752 818 - -
Tpr4g4461 1062 ProSiteProfiles Zinc finger RanBP2 type profile. 411 440 IPR001876 -
Tpr4g4461 1062 SMART rrm1_1 467 542 IPR000504 GO:0003723
Tpr4g4461 1062 SMART rrm1_1 311 386 IPR000504 GO:0003723
Tpr4g4461 1062 MobiDBLite consensus disorder prediction 186 226 - -
Tpr4g4461 1062 Pfam G-patch domain 988 1029 IPR000467 GO:0003676
Tpr4g4461 1062 SMART G-patch_5 985 1031 IPR000467 GO:0003676
Tpr4g4461 1062 PANTHER RNA-BINDING PROTEIN 218 1062 - -
Tpr4g4461 1062 PANTHER RNA-BINDING PROTEIN 38 210 - -
Tpr4g4461 1062 Pfam OCRE domain 608 656 IPR041591 -
Tpr4g4461 1062 MobiDBLite consensus disorder prediction 252 304 - -
Tpr4g4461 1062 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 390 IPR000504 GO:0003723
Tpr4g4461 1062 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 466 546 IPR000504 GO:0003723
Tpr4g4461 1062 MobiDBLite consensus disorder prediction 71 109 - -
Tpr4g4461 1062 Gene3D - 447 571 IPR012677 -
Tpr4g4461 1062 Gene3D - 289 398 IPR012677 -
Tpr4g4461 1062 SUPERFAMILY RNA-binding domain, RBD 227 388 IPR035979 GO:0003676
Tpr4g4461 1062 CDD OCRE_SUA_like 605 657 IPR035623 -
Tpr4g4461 1062 MobiDBLite consensus disorder prediction 884 928 - -
Tpr4g4461 1062 MobiDBLite consensus disorder prediction 659 681 - -
Tpr4g4461 1062 Gene3D - 411 441 - -
Tpr4g4461 1062 PANTHER FI21118P1 38 210 - -
Tpr4g4461 1062 PANTHER FI21118P1 218 1062 - -
Tpr4g4461 1062 MobiDBLite consensus disorder prediction 186 307 - -
Tpr4g4461 1062 ProSitePatterns Zinc finger RanBP2-type signature. 415 434 IPR001876 -
Tpr4g4461 1062 ProSiteProfiles G-patch domain profile. 987 1033 IPR000467 GO:0003676
Tpr4g4461 1062 CDD RRM1_RRM2_RBM5_like 308 388 - -
Tpr4g4461 1062 SMART zf_4 413 437 IPR001876 -
Tpr4g4461 1062 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 468 533 IPR000504 GO:0003723
Tpr4g4461 1062 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 371 IPR000504 GO:0003723
Tpr4g4461 1062 SUPERFAMILY RNA-binding domain, RBD 464 551 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4461 Tpr-Chr4 52482210 52490539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4461 309 530 Eukaryotic Initiation Factors Gene Family AT2G36660 25.200 1.18e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4461 K13094 - gmx:100787998 1618.98