Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4448 ATGGAGAAAACAAGATCCTCAGATCATGTTGTTCTCTTCATTGACCAACAAAACAACCCTAAACCTTCCACAATGGAAACTGAAACTCACAACAACACTGAACCTCATCAAGAGAAGCCCAAACATCCCTTAAGAGCAAAAACCCTTAACCGTCTAAGCTTCTCCAAACCCAAATCTCGAATCCTTGAATACAGTCATCCACACCGCAACAAACTATCTACCGCCGATGAAGAAGAAGACACTCATTTACCTTCATACAAGATTTCTTCTGATGACGAAGACGACAATAACTATGAATACAAGGAAGAAGAATCGGAAGATGATTACGATGAGGCTTTGCACGATCCAAAGTTAAACAACAAAAAGAAAAAATTTAAAGTGAAGTGGAGGCTAGTTTTTGAGTGGATACTATTTATAAACATATTAACATGTTTGGTTTGTTCTCTCGTAGCAAAACGCATAAAAAACATGCATATATTAGGGTTAGAGGTTTGGAAATGGTGTTTAATGGCAATGGTCACATTTAGTGGCCGTTTATTTTCAAGTTGGTTGGTTAGTTTAACCGTTTTTTTCGTCTTAAGAAACTTCATGTTAAGAGAAAAAGTTTTATATTTCATCTATGGTTTACGAAACAGCATTCGTAATTGTTTATGGTTAGGGCTCGTTTTAATGTCATACTGGAGTTTAGTTTTTGAAGATGTCCAAAAGAAAAACCATAAATTCCTTAACAAAGTGTTTCAAGCCCTTGTCGCGGTTTTAGTAGGTGCAACAATTTGGCTAGTGAAAATTATTTTGGTAAAAATGTTAGCTTCTTCATTTCATGTGACAACATATTTTGATAGGATGAAAGAGAGTGTTTTTCATCATTATGTGTTGGATGCATTGTCGGGTCCACCGGTTGAAAACAAAGAAGAAATATCGAAAGAGCATCATTTGTTGGGATCGAAGACGATGCCAGTGGGTGCGGGGAGGTGGAAGAAGATGAAGAGATTTGGTTCGAGGAGGATTGATATGGAGAAGTTGAAGAAACTTAGTATGGAGAGTAGTGGTTCTGCTTGGAGTGTTAAAAGGCTTGTTAATTATGTTAGGTCTTCAGGTTTGTCTACCATTTCTAGGACTGTTGATGATTTTGGTAATAGTGAGAGTGAGATTAGTAGTGAATGGGAAGCTAGAAGTTGTGCTCAGAAGATTTTCAACAATGTTGCTAAACCTGGTGCTAAGTATATTGAAGAGGAAGATCTCATGAGATTTTTGAAGAGGGTTGAGATACATACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACTGGAAAAATTAGCAGATCCTCATTTAGAAATTGGGTGATTCGAGCATATTATGAAAGAAAAGCACTAGCACAATCATTGAATGATACAAAAACAGCAGTGCAACAACTTCACAAATTAGCAAGTGCAGTAGTGAGTGTGATAATAATAATTGTGACACTTTTGGTGATGGAAGTAGCTACAATGAAGATAATATTGTTTTGTATCACACAAACTGTTTTAATAGGAGTTGCATTTCAAGGCACTTGCAAAACTGTCTTGGAAGCTATTATCTTTGTCTTCATCATGCATCCTTTTGATATTGGAGACCGTTGTGTTATTGATGGTGTTCAGATGATTGTGGAAGAAATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATATTACCCTAATGCTGTCTTGCTCACTAAGCCAATAAGCAATTTTTATAGAAGTCCAGAGATGTGTGATGCAATTGATTTCACCATTGATGTCACAACTCCTATAGAGACTATCATTACACTCAAGAAATCAATAAAAATGTACATTGAGAGCAAACCAAAGTATTGGAATCCAAAGCACAGTGTGATGGCAAAACAAATAGATCATGTGGACAAGTTAAGGTTATGTTTATGTGTGCAACACACCATTAACCATCAAAACTATGGTGAGAGAAGCACTAGAATATCAGAACTCATCTTGGAGTTGAAAAAGATGTTTGAGATTCATGGTATCAAGTACCATCTTCTTCCTCAAGAAATCCATCTCACTCAAATGAATATTGGAAATGGGAGAAATTTGTTTCAATCATGA 2112 0.3608 MEKTRSSDHVVLFIDQQNNPKPSTMETETHNNTEPHQEKPKHPLRAKTLNRLSFSKPKSRILEYSHPHRNKLSTADEEEDTHLPSYKISSDDEDDNNYEYKEEESEDDYDEALHDPKLNNKKKKFKVKWRLVFEWILFINILTCLVCSLVAKRIKNMHILGLEVWKWCLMAMVTFSGRLFSSWLVSLTVFFVLRNFMLREKVLYFIYGLRNSIRNCLWLGLVLMSYWSLVFEDVQKKNHKFLNKVFQALVAVLVGATIWLVKIILVKMLASSFHVTTYFDRMKESVFHHYVLDALSGPPVENKEEISKEHHLLGSKTMPVGAGRWKKMKRFGSRRIDMEKLKKLSMESSGSAWSVKRLVNYVRSSGLSTISRTVDDFGNSESEISSEWEARSCAQKIFNNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVTLLVMEVATMKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFIMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMCDAIDFTIDVTTPIETIITLKKSIKMYIESKPKYWNPKHSVMAKQIDHVDKLRLCLCVQHTINHQNYGERSTRISELILELKKMFEIHGIKYHLLPQEIHLTQMNIGNGRNLFQS* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4448 703 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 700 IPR016688 -
Tpr4g4448 703 MobiDBLite consensus disorder prediction 31 45 - -
Tpr4g4448 703 Gene3D - 533 582 IPR023408 -
Tpr4g4448 703 MobiDBLite consensus disorder prediction 1 112 - -
Tpr4g4448 703 PIRSF Memb_At2g17000 3 702 IPR016688 -
Tpr4g4448 703 SUPERFAMILY Sm-like ribonucleoproteins 524 582 IPR010920 -
Tpr4g4448 703 Pfam Mechanosensitive ion channel 474 679 IPR006685 GO:0016020|GO:0055085
Tpr4g4448 703 MobiDBLite consensus disorder prediction 61 94 - -
Tpr4g4448 703 MobiDBLite consensus disorder prediction 95 110 - -
Tpr4g4448 703 MobiDBLite consensus disorder prediction 10 30 - -
Tpr4g4448 703 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4448 Tpr-Chr4 52272126 52279336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4448 40 693 Mechanosensitive Ion Channel Family AT5G12080 43.169 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4448 K22048 - gmx:100813521 1067.76